Brand  (β version)

PDB ID: 4V85

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Ligands
Code Name Style Show Link
GNP Phosphoaminophosphonic acid-guanylate ester PoSSuM
MG Magnesium ion PoSSuM
Non-standard Residues
Code Name Show
5OH (2s)-amino[(4r,6s)-2-amino-6-hydroxy-3,4,5,6-tetrahydropyrimidin-4-yl]ethanoic acid
DPP Diaminopropanoic acid
KBE Beta-lysine
UAL (2z)-2-amino-3-(carbamoylamino)prop-2-enoic acid
Glycosylation
Code Name Emphasize
Modification
Code Name Show

Structure summary

Code : 4V85   PDBj   RCSB PDB   PDBe
Header : RIBOSOME/ANTIBIOTIC
Title : Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.
Release Data : 2014-07-09
Compound :
mol_id molecule chains
1 16S rRNA AA
mol_id molecule chains
2 30S ribosomal protein S2 AB
mol_id molecule chains
3 30S ribosomal protein S3 AC
mol_id molecule chains
4 30S ribosomal protein S4 AD
mol_id molecule chains
5 30S ribosomal protein S5 AE
mol_id molecule chains
6 30S ribosomal protein S6 1 AF
mol_id molecule chains
7 30S ribosomal protein S7 AG
mol_id molecule chains
8 30S ribosomal protein S8 AH
mol_id molecule chains
9 30S ribosomal protein S9 AI
mol_id molecule chains
10 30S ribosomal protein S10 AJ
mol_id molecule chains
11 30S ribosomal protein S11 AK
mol_id molecule chains
12 30S ribosomal protein S12 1 AL
mol_id molecule chains
13 30S ribosomal protein S13 AM
mol_id molecule chains
14 30S ribosomal protein S14 AN
mol_id molecule chains
15 30S ribosomal protein S15 1 AO
mol_id molecule chains
16 30S ribosomal protein S16 AP
mol_id molecule chains
17 30S ribosomal protein S17 AQ
mol_id molecule chains
18 30S ribosomal protein S18 AR
mol_id molecule chains
19 30S ribosomal protein S19 AS
mol_id molecule chains
20 30S ribosomal protein S20 AT
mol_id molecule chains
21 30S ribosomal protein S21 AU
mol_id molecule chains
22 messenger RNA AV
mol_id molecule chains synonym
23 Peptide chain release factor 3 AW RF-3
mol_id molecule chains
24 Viomycin AY
mol_id molecule chains
25 50S ribosomal protein L27 B0
mol_id molecule chains
26 50S ribosomal protein L28 B1
mol_id molecule chains synonym
27 50S ribosomal protein L29 B2 50S ribosomal subunit protein L29
mol_id molecule chains
28 50S ribosomal protein L30 B3
mol_id molecule chains
29 50S ribosomal protein L32 B4
mol_id molecule chains
30 50S ribosomal protein L33 B5
mol_id molecule chains
31 50S ribosomal protein L34 B6
mol_id molecule chains
32 50S ribosomal protein L35 B7
mol_id molecule chains
33 50S ribosomal protein L36 1 B8
mol_id molecule chains
34 23S rRNA BA
mol_id molecule chains
35 5S ribosomal RNA BB
mol_id molecule chains
36 50S ribosomal protein L2 BC
mol_id molecule chains
37 50S ribosomal protein L3 BD
mol_id molecule chains
38 50S ribosomal protein L4 BE
mol_id molecule chains
39 50S ribosomal protein L5 BF
mol_id molecule chains
40 50S ribosomal protein L6 BG
mol_id molecule chains
41 50S ribosomal protein L10 BH
mol_id molecule chains
42 50S ribosomal protein L11 BI
mol_id molecule chains
43 50S ribosomal protein L7/L12 BJ,BK,BL,BM
mol_id molecule chains
44 50S ribosomal protein L13 BN
mol_id molecule chains
45 50S ribosomal protein L14 BO
mol_id molecule chains
46 50S ribosomal protein L15 BP
mol_id molecule chains
47 50S ribosomal protein L16 BQ
mol_id molecule chains
48 50S ribosomal protein L17 BR
mol_id molecule chains
49 50S ribosomal protein L18 BS
mol_id molecule chains
50 50S ribosomal protein L19 BT
mol_id molecule chains
51 50S ribosomal protein L20 BU
mol_id molecule chains
52 50S ribosomal protein L21 BV
mol_id molecule chains
53 50S ribosomal protein L22 BW
mol_id molecule chains
54 50S ribosomal protein L23 BX
mol_id molecule chains
55 50S ribosomal protein L24 1 BY
mol_id molecule chains
56 50S ribosomal protein L25 1 BZ
Source :
mol_id organism_scientific
1
mol_id organism_scientific
2 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
3 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
4 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
5 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
6 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
7 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
8 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
9 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
10 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
11 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
12 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
13 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
14 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
15 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
16 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
17 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
18 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
19 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
20 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
21 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
22
synthetic: yes
mol_id organism_scientific expression_system
23 Escherichia coli  (taxid:562) Escherichia coli  (taxid:469008)
strain: MRE600
gene: b4375, JW5873, miaD, prfC, Termination Release Factor 3, tos
expression_system_strain: BL21(DE3)
mol_id organism_scientific
24 Streptomyces  (taxid:1883)
synthetic: yes
mol_id organism_scientific
25 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
26 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
27 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
28 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
29 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
30 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
31 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
32 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
33 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
34 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
35 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
36 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
37 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
38 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
39 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
40 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
41 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
42 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
43 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
44 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
45 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
46 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
47 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
48 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
49 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
50 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
51 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
52 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
53 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
54 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
55 Escherichia coli  (taxid:562)
strain: CSH142
mol_id organism_scientific
56 Escherichia coli  (taxid:562)
strain: CSH142
Authors : Zhou, J., Lancaster, L., Trakhanov, S., Noller, H.F.
Keywords : typeII release factor binding with ribosome, RIBOSOME-ANTIBIOTIC complex
Exp. method : X-RAY DIFFRACTION ( 3.2 Å )
Citation :

Crystal structure of release factor RF3 trapped in the GTP state on a rotated conformation of the ribosome.

Zhou, J.,Lancaster, L.,Trakhanov, S.  et al.
(2012)  Rna  18 : 230 - 240

PubMed: 22187675
DOI: 10.1261/rna.031187.111

Reaction

Chain : AB
UniProt : C3TPN2 (C3TPN2_ECOLX)
Reaction : -
Chain : AC
UniProt : C3SQX2 (C3SQX2_ECOLX)
Reaction : -
Chain : AD
UniProt : C3SR62 (C3SR62_ECOLX)
Reaction : -
Chain : AE
UniProt : C3SR27 (C3SR27_ECOLX)
Reaction : -
Chain : AF
UniProt : C3SFQ7 (C3SFQ7_ECOLX)
Reaction : -
Chain : AG
UniProt : C3SQS2 (C3SQS2_ECOLX)
Reaction : -
Chain : AH
UniProt : C3SR12 (C3SR12_ECOLX)
Reaction : -
Chain : AI
UniProt : C3SRY2 (C3SRY2_ECOLX)
Reaction : -
Chain : AJ
UniProt : C3SQT7 (C3SQT7_ECOLX)
Reaction : -
Chain : AK
UniProt : C3SR57 (C3SR57_ECOLX)
Reaction : -
Chain : AL
UniProt : C3SQR7 (C3SQR7_ECOLX)
Reaction : -
Chain : AM
UniProt : C3SR52 (C3SR52_ECOLX)
Reaction : -
Chain : AN
UniProt : C3SR07 (C3SR07_ECOLX)
Reaction : -
Chain : AO
UniProt : C3SSQ7 (C3SSQ7_ECOLX)
Reaction : -
Chain : AP
UniProt : C3SYP2 (C3SYP2_ECOLX)
Reaction : -
Chain : AQ
UniProt : C3SQY7 (C3SQY7_ECOLX)
Reaction : -
Chain : AR
UniProt : C3SFP7 (C3SFP7_ECOLX)
Reaction : -
Chain : AS
UniProt : C3SQW2 (C3SQW2_ECOLX)
Reaction : -
Chain : AT
UniProt : P0A7U7 (RS20_ECOLI)
Reaction : -
Chain : AU
UniProt : C3STZ7 (C3STZ7_ECOLX)
Reaction : -
Chain : AW
UniProt : P0A7I4 (RF3_ECOLI)
Reaction : -
Chain : B0
UniProt : C3SSG7 (C3SSG7_ECOLX)
Reaction : -
Chain : B1
UniProt : C3SME2 (C3SME2_ECOLX)
Reaction : -
Chain : B2
UniProt : C3SQY2 (C3SQY2_ECOLX)
Reaction : -
Chain : B3
UniProt : C3SR32 (C3SR32_ECOLX)
Reaction : -
Chain : B4
UniProt : C3TE02 (C3TE02_ECOLX)
Reaction : -
Chain : B5
UniProt : C3SME7 (C3SME7_ECOLX)
Reaction : -
Chain : B6
UniProt : C3SLL2 (C3SLL2_ECOLX)
Reaction : -
Chain : B7
UniProt : C3T7Q2 (C3T7Q2_ECOLX)
Reaction : -
Chain : B8
UniProt : C3SR47 (C3SR47_ECOLX)
Reaction : -
Chain : BC
UniProt : C3SQV7 (C3SQV7_ECOLX)
Reaction : -
Chain : BD
UniProt : C3SQU2 (C3SQU2_ECOLX)
Reaction : -
Chain : BE
UniProt : C3SQU7 (C3SQU7_ECOLX)
Reaction : -
Chain : BF
UniProt : C3SR02 (C3SR02_ECOLX)
Reaction : -
Chain : BG
UniProt : C3SR17 (C3SR17_ECOLX)
Reaction : -
Chain : BH
UniProt : C3SIB7 (C3SIB7_ECOLX)
Reaction : -
Chain : BI
UniProt : C3SIC7 (C3SIC7_ECOLX)
Reaction : -
Chain : BJ, BK, BL, BM
UniProt : C3SIB2 (C3SIB2_ECOLX)
Reaction : -
Chain : BN
UniProt : C3SRX7 (C3SRX7_ECOLX)
Reaction : -
Chain : BO
UniProt : C3SQZ2 (C3SQZ2_ECOLX)
Reaction : -
Chain : BP
UniProt : C3SR37 (C3SR37_ECOLX)
Reaction : -
Chain : BQ
UniProt : C3SQX7 (C3SQX7_ECOLX)
Reaction : -
Chain : BR
UniProt : C3SR72 (C3SR72_ECOLX)
Reaction : -
Chain : BS
UniProt : C3SR22 (C3SR22_ECOLX)
Reaction : -
Chain : BT
UniProt : C3SYQ7 (C3SYQ7_ECOLX)
Reaction : -
Chain : BU
UniProt : C3T7Q7 (C3T7Q7_ECOLX)
Reaction : -
Chain : BV
UniProt : C3SSG2 (C3SSG2_ECOLX)
Reaction : -
Chain : BW
UniProt : C3SQW7 (C3SQW7_ECOLX)
Reaction : -
Chain : BX
UniProt : C3SQV2 (C3SQV2_ECOLX)
Reaction : -
Chain : BY
UniProt : C3SQZ7 (C3SQZ7_ECOLX)
Reaction : -
Chain : BZ
UniProt : C3T3H7 (C3T3H7_ECOLX)
Reaction : -