Het-PDB Navi2 (PDB: 4V7D)

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Ligands
Code	Name		Style	Show	Link
ZN	Zinc ion				PoSSuM

Non-standard Residues
Code	Name	Show
5OH	(2s)-amino[(4r,6s)-2-amino-6-hydroxy-3,4,5,6-tetrahydropyrimidin-4-yl]ethanoic acid
DPP	Diaminopropanoic acid
KBE	Beta-lysine
UAL	(2z)-2-amino-3-(carbamoylamino)prop-2-enoic acid

Glycosylation
Code	Name	Emphasize

Modification
Code	Name	Show

Download interaction data: 4V7D

Code :

4V7D PDBj RCSB PDB PDBe

Header :

TRANSLATION/antibiotic

Title :

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)

Release Data :

2014-07-09

Compound :

mol_id	molecule	chains
1	23S ribosomal RNA	AA

mol_id	molecule	chains
2	5S ribosomal RNA	AB

mol_id	molecule	chains
3	50S ribosomal protein L1	AC

mol_id	molecule	chains
4	50S ribosomal protein L2	AD

mol_id	molecule	chains
5	50S ribosomal protein L3	AE

mol_id	molecule	chains
6	50S ribosomal protein L4	AF

mol_id	molecule	chains
7	50S ribosomal protein L5	AG

mol_id	molecule	chains
8	50S ribosomal protein L6	AH

mol_id	molecule	chains
9	50S ribosomal protein L9	AI

mol_id	molecule	chains
10	50S ribosomal protein L10	AJ

mol_id	molecule	chains
11	50S ribosomal protein L11	AK

mol_id	molecule	chains
12	50S ribosomal protein L12	AL

mol_id	molecule	chains
13	50S ribosomal protein L13	AM

mol_id	molecule	chains
14	50S ribosomal protein L14	AN

mol_id	molecule	chains
15	50S ribosomal protein L15	AO

mol_id	molecule	chains
16	50S ribosomal protein L16	AP

mol_id	molecule	chains
17	50S ribosomal protein L17	AQ

mol_id	molecule	chains
18	50S ribosomal protein L18	AR

mol_id	molecule	chains
19	50S ribosomal protein L19	AS

mol_id	molecule	chains
20	50S ribosomal protein L20	AT

mol_id	molecule	chains
21	50S ribosomal protein L21	AU

mol_id	molecule	chains
22	50S ribosomal protein L22	AV

mol_id	molecule	chains
23	50S ribosomal protein L23	AW

mol_id	molecule	chains
24	50S ribosomal protein L24	AX

mol_id	molecule	chains
25	50S ribosomal protein L25	AY

mol_id	molecule	chains
26	50S ribosomal protein L27	AZ

mol_id	molecule	chains
27	50S ribosomal protein L28	A1

mol_id	molecule	chains
28	50S ribosomal protein L29	A2

mol_id	molecule	chains
29	50S ribosomal protein L30	A3

mol_id	molecule	chains
30	50S ribosomal protein L32	A4

mol_id	molecule	chains
31	50S ribosomal protein L33	A5

mol_id	molecule	chains
32	50S ribosomal protein L34	A6

mol_id	molecule	chains
33	50S ribosomal protein L35	A7

mol_id	molecule	chains
34	50S ribosomal protein L36	A8

mol_id	molecule	chains
35	16S ribosomal RNA	BA

mol_id	molecule	chains
36	30S ribosomal protein S2	BB

mol_id	molecule	chains
37	30S ribosomal protein S3	BC

mol_id	molecule	chains
38	30S ribosomal protein S4	BD

mol_id	molecule	chains
39	30S ribosomal protein S5	BE

mol_id	molecule	chains
40	30S ribosomal protein S6	BF

mol_id	molecule	chains
41	30S ribosomal protein S7	BG

mol_id	molecule	chains
42	30S ribosomal protein S8	BH

mol_id	molecule	chains
43	30S ribosomal protein S9	BI

mol_id	molecule	chains
44	30S ribosomal protein S10	BJ

mol_id	molecule	chains
45	30S ribosomal protein S11	BK

mol_id	molecule	chains
46	30S ribosomal protein S12	BL

mol_id	molecule	chains
47	30S ribosomal protein S13	BM

mol_id	molecule	chains
48	30S ribosomal protein S14	BN

mol_id	molecule	chains
49	30S ribosomal protein S15	BO

mol_id	molecule	chains
50	30S ribosomal protein S16	BP

mol_id	molecule	chains
51	30S ribosomal protein S17	BQ

mol_id	molecule	chains
52	30S ribosomal protein S18	BR

mol_id	molecule	chains
53	30S ribosomal protein S19	BS

mol_id	molecule	chains
54	30S ribosomal protein S20	BT

mol_id	molecule	chains
55	30S ribosomal protein S21	BU

mol_id	molecule	chains
56	tRNA	BV,BW
	fragment: SEE REMARK 999

mol_id	molecule	chains
57	mRNA	BX
	fragment: SEE REMARK 999

mol_id	molecule	chains	synonym
58	Elongation Factor G	BZ	EF-G

mol_id	molecule	chains
59	viomycin	BY

Source :

mol_id	organism_scientific
1	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
2	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
3	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
4	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
5	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
6	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
7	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
8	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
9	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
10	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
11	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
12	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
13	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
14	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
15	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
16	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
17	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
18	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
19	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
20	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
21	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
22	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
23	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
24	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
25	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
26	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
27	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
28	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
29	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
30	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
31	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
32	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
33	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
34	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
35	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
36	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
37	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
38	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
39	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
40	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
41	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
42	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
43	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
44	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
45	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
46	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
47	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
48	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
49	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
50	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
51	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
52	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
53	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
54	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
55	Escherichia coli (taxid:562)
	strain: MRE600

mol_id	organism_scientific
56	Escherichia coli (taxid:83333)
	strain: K-12

mol_id	organism_scientific	organism_common
57	Synthetic	32630
	synthetic: yes

mol_id	organism_scientific	expression_system
58	Escherichia coli (taxid:83333)	Escherichia coli (taxid:511693)
	strain: K-12 gene: fusA expression_system_strain: BL21 expression_system_vector_type: plasmid expression_system_plasmid: pET24b

mol_id	organism_scientific
59	Streptomyces (taxid:1883)
	synthetic: yes

Authors :

Brilot, A.F., Korostelev, A.A., Ermolenko, D.N., Grigorieff, N.

Keywords :

translation, EF-G, single particle analysis, pre-translocation translation complex, viomycin, TRANSLATION-antibiotic complex

Exp. method :

ELECTRON MICROSCOPY ( 7.6 Å )

Citation :

Structure of the ribosome with elongation factor G trapped in the pretranslocation state.

Brilot, A.F.,Korostelev, A.A.,Ermolenko, D.N. et al.
(2013) Proc.Natl.Acad.Sci.USA 110 : 20994 - 20999

PubMed: 24324137
DOI: 10.1073/pnas.1311423110

Chain :	AC
UniProt :	P0A7L0 (RL1_ECOLI)
Reaction :	-

Chain :	AD
UniProt :	P60422 (RL2_ECOLI)
Reaction :	-

Chain :	AE
UniProt :	P60438 (RL3_ECOLI)
Reaction :	-

Chain :	AF
UniProt :	P60723 (RL4_ECOLI)
Reaction :	-

Chain :	AG
UniProt :	P62399 (RL5_ECOLI)
Reaction :	-

Chain :	AH
UniProt :	P0AG55 (RL6_ECOLI)
Reaction :	-

Chain :	AI
UniProt :	P0A7R1 (RL9_ECOLI)
Reaction :	-

Chain :	AJ
UniProt :	P0A7J3 (RL10_ECOLI)
Reaction :	-

Chain :	AK
UniProt :	P0A7J7 (RL11_ECOLI)
Reaction :	-

Chain :	AL
UniProt :	P0A7K2 (RL7_ECOLI)
Reaction :	-

Chain :	AM
UniProt :	P0AA10 (RL13_ECOLI)
Reaction :	-

Chain :	AN
UniProt :	P0ADY3 (RL14_ECOLI)
Reaction :	-

Chain :	AO
UniProt :	P02413 (RL15_ECOLI)
Reaction :	-

Chain :	AP
UniProt :	P0ADY7 (RL16_ECOLI)
Reaction :	-

Chain :	AQ
UniProt :	P0AG44 (RL17_ECOLI)
Reaction :	-

Chain :	AR
UniProt :	P0C018 (RL18_ECOLI)
Reaction :	-

Chain :	AS
UniProt :	P0A7K6 (RL19_ECOLI)
Reaction :	-

Chain :	AT
UniProt :	P0A7L3 (RL20_ECOLI)
Reaction :	-

Chain :	AU
UniProt :	P0AG48 (RL21_ECOLI)
Reaction :	-

Chain :	AV
UniProt :	P61175 (RL22_ECOLI)
Reaction :	-

Chain :	AW
UniProt :	P0ADZ0 (RL23_ECOLI)
Reaction :	-

Chain :	AX
UniProt :	P60624 (RL24_ECOLI)
Reaction :	-

Chain :	AY
UniProt :	P68919 (RL25_ECOLI)
Reaction :	-

Chain :	AZ
UniProt :	P0A7L8 (RL27_ECOLI)
Reaction :	-

Chain :	A1
UniProt :	P0A7M2 (RL28_ECOLI)
Reaction :	-

Chain :	A2
UniProt :	P0A7M6 (RL29_ECOLI)
Reaction :	-

Chain :	A3
UniProt :	P0AG51 (RL30_ECOLI)
Reaction :	-

Chain :	A4
UniProt :	P0A7N4 (RL32_ECOLI)
Reaction :	-

Chain :	A5
UniProt :	P0A7N9 (RL33_ECOLI)
Reaction :	-

Chain :	A6
UniProt :	P0A7P5 (RL34_ECOLI)
Reaction :	-

Chain :	A7
UniProt :	P0A7Q1 (RL35_ECOLI)
Reaction :	-

Chain :	A8
UniProt :	P0A7Q6 (RL36_ECOLI)
Reaction :	-

Chain :	BB
UniProt :	P0A7V0 (RS2_ECOLI)
Reaction :	-

Chain :	BC
UniProt :	P0A7V3 (RS3_ECOLI)
Reaction :	-

Chain :	BD
UniProt :	P0A7V8 (RS4_ECOLI)
Reaction :	-

Chain :	BE
UniProt :	P0A7W1 (RS5_ECOLI)
Reaction :	-

Chain :	BF
UniProt :	P02358 (RS6_ECOLI)
Reaction :	-

Chain :	BG
UniProt :	P02359 (RS7_ECOLI)
Reaction :	-

Chain :	BH
UniProt :	P0A7W7 (RS8_ECOLI)
Reaction :	-

Chain :	BI
UniProt :	P0A7X3 (RS9_ECOLI)
Reaction :	-

Chain :	BJ
UniProt :	P0A7R5 (RS10_ECOLI)
Reaction :	-

Chain :	BK
UniProt :	P0A7R9 (RS11_ECOLI)
Reaction :	-

Chain :	BL
UniProt :	P0A7S3 (RS12_ECOLI)
Reaction :	-

Chain :	BM
UniProt :	P0A7S9 (RS13_ECOLI)
Reaction :	-

Chain :	BN
UniProt :	P0AG59 (RS14_ECOLI)
Reaction :	-

Chain :	BO
UniProt :	P0ADZ4 (RS15_ECOLI)
Reaction :	-

Chain :	BP
UniProt :	P0A7T3 (RS16_ECOLI)
Reaction :	-

Chain :	BQ
UniProt :	P0AG63 (RS17_ECOLI)
Reaction :	-

Chain :	BR
UniProt :	P0A7T7 (RS18_ECOLI)
Reaction :	-

Chain :	BS
UniProt :	P0A7U3 (RS19_ECOLI)
Reaction :	-

Chain :	BT
UniProt :	P0A7U7 (RS20_ECOLI)
Reaction :	-

Chain :	BU
UniProt :	P68679 (RS21_ECOLI)
Reaction :	-

Chain :

UniProt :

P0A6M8 (EFG_ECOLI)

Reaction:	EC:	Evidence:
Reaction:	Physiological Direction:	Evidence:
GTP + H2O = GDP + H(+) + phosphate	-	PubMed:8985244
GTP + H2O = GDP + H(+) + phosphate	left-to-right	PubMed:8985244

PDB ID: 4V7D

Hetero Atom Contents

Structure summary

Reaction