Het-PDB Navi2 (PDB: 4V70)

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Data format:

Color scheme of protein:

Ligands
Code	Name		Style	Show	Link
FME	N-formylmethionine				PoSSuM
VAL	Valine				PoSSuM

Non-standard Residues
Code	Name	Show
4SU	4-thiouridine-5'-monophosphate
5MU	5-methyluridine 5'-monophosphate
6MZ	N6-methyladenosine-5'-monophosphate
7MG	7n-methyl-8-hydroguanosine-5'-monophosphate
CM0	5-(carboxymethoxy) uridine-5'-monophosphate
H2U	5,6-dihydrouridine-5'-monophosphate
OMC	O2'-methylycytidine-5'-monophosphate
PSU	Pseudouridine-5'-monophosphate

Glycosylation
Code	Name	Emphasize

Modification
Code	Name	Show
ACE	Acetyl group
NH2	Amino group

Download interaction data: 4V70

Code :

4V70 PDBj RCSB PDB PDBe

Header :

RIBOSOME

Title :

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3)

Release Data :

2014-07-09

Compound :

mol_id	molecule	chains
1	30S ribosomal protein S2	AB

mol_id	molecule	chains
2	30S ribosomal protein S3	AC

mol_id	molecule	chains
3	30S ribosomal protein S4	AD

mol_id	molecule	chains
4	30S ribosomal protein S5	AE

mol_id	molecule	chains
5	30S ribosomal protein S6	AF

mol_id	molecule	chains
6	30S ribosomal protein S7	AG

mol_id	molecule	chains
7	30S ribosomal protein S8	AH

mol_id	molecule	chains
8	30S ribosomal protein S9	AI

mol_id	molecule	chains
9	30S ribosomal protein S10	AJ

mol_id	molecule	chains
10	30S ribosomal protein S11	AK

mol_id	molecule	chains
11	30S ribosomal protein S12	AL

mol_id	molecule	chains
12	30S ribosomal protein S13	AM

mol_id	molecule	chains
13	30S ribosomal protein S14	AN

mol_id	molecule	chains
14	30S ribosomal protein S15	AO

mol_id	molecule	chains
15	30S ribosomal protein S16	AP

mol_id	molecule	chains
16	30S ribosomal protein S17	AQ

mol_id	molecule	chains
17	30S ribosomal protein S18	AR

mol_id	molecule	chains
18	30S ribosomal protein S19	AS

mol_id	molecule	chains
19	30S ribosomal protein S20	AT

mol_id	molecule	chains
20	30S ribosomal protein S21	AU

mol_id	molecule	chains
21	16S ribosomal RNA	AA

mol_id	molecule	chains
22	fMet-Val-tRNA-Val	A1

mol_id	molecule	chains
23	5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3'	A2
	other_details: mRNA

mol_id	molecule	chains
24	tRNA-fMet	A3

mol_id	molecule	chains
25	50S ribosomal protein L2	BC

mol_id	molecule	chains
26	50S ribosomal protein L3	BD

mol_id	molecule	chains
27	50S ribosomal protein L4	BE

mol_id	molecule	chains
28	50S ribosomal protein L5	BF

mol_id	molecule	chains
29	50S ribosomal protein L6	BG

mol_id	molecule	chains
30	50S ribosomal protein L9	BH

mol_id	molecule	chains
31	50S ribosomal protein L11	BI

mol_id	molecule	chains
32	50S ribosomal protein L13	BJ

mol_id	molecule	chains
33	50S ribosomal protein L14	BK

mol_id	molecule	chains
34	50S ribosomal protein L15	BL

mol_id	molecule	chains
35	50S ribosomal protein L16	BM

mol_id	molecule	chains
36	50S ribosomal protein L17	BN

mol_id	molecule	chains
37	50S ribosomal protein L18	BO

mol_id	molecule	chains
38	50S ribosomal protein L19	BP

mol_id	molecule	chains
39	50S ribosomal protein L20	BQ

mol_id	molecule	chains
40	50S ribosomal protein L21	BR

mol_id	molecule	chains
41	50S ribosomal protein L22	BS

mol_id	molecule	chains
42	50S ribosomal protein L23	BT

mol_id	molecule	chains
43	50S ribosomal protein L24	BU

mol_id	molecule	chains
44	50S ribosomal protein L25	BV

mol_id	molecule	chains
45	50S ribosomal protein L27	BW

mol_id	molecule	chains
46	50S ribosomal protein L28	BX

mol_id	molecule	chains
47	50S ribosomal protein L29	BY

mol_id	molecule	chains
48	50S ribosomal protein L30	BZ

mol_id	molecule	chains
49	50S ribosomal protein L32	B0

mol_id	molecule	chains
50	50S ribosomal protein L33	B1

mol_id	molecule	chains
51	50S ribosomal protein L34	B2

mol_id	molecule	chains
52	50S ribosomal protein L35	B3

mol_id	molecule	chains
53	50S ribosomal protein L36	B4

mol_id	molecule	chains
54	23S ribosomal RNA	BA

mol_id	molecule	chains
55	5S ribosomal RNA	BB

mol_id	molecule	chains
56	50S ribosomal protein L1	B5

Source :

mol_id	organism_scientific
1	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
2	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
3	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
4	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
5	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
6	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
7	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
8	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
9	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
10	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
11	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
12	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
13	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
14	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
15	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
16	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
17	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
18	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
19	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
20	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
21	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
22	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
23
	synthetic: yes

mol_id	organism_scientific
24	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
25	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
26	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
27	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
28	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
29	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
30	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
31	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
32	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
33	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
34	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
35	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
36	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
37	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
38	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
39	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
40	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
41	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
42	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
43	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
44	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
45	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
46	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
47	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
48	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
49	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
50	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
51	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
52	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
53	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
54	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
55	Escherichia coli (taxid:83333)
	strain: K12

mol_id	organism_scientific
56	Escherichia coli (taxid:83333)
	strain: K12

Authors :

Blau, C., Bock, L.V., Schroder, G.F., Davydov, I., Fischer, N., Stark, H., Rodnina, M.V., Vaiana, A.C., Grubmuller, H.

Keywords :

cryo-EM refinement, tRNA, translocation intermediate, RIBOSOME

Exp. method :

ELECTRON MICROSCOPY ( 17 Å )

Citation :

Energy barriers and driving forces in tRNA translocation through the ribosome.

Bock, L.V.,Blau, C.,Schroder, G.F. et al.
(2013) Nat.Struct.Mol.Biol. 20 : 1390 - 1396

PubMed: 24186064
DOI: 10.1038/nsmb.2690

Chain :	AB
UniProt :	P0A7V0 (RS2_ECOLI)
Reaction :	-

Chain :	AC
UniProt :	P0A7V3 (RS3_ECOLI)
Reaction :	-

Chain :	AD
UniProt :	P0A7V8 (RS4_ECOLI)
Reaction :	-

Chain :	AE
UniProt :	P0A7W1 (RS5_ECOLI)
Reaction :	-

Chain :	AF
UniProt :	P02358 (RS6_ECOLI)
Reaction :	-

Chain :	AG
UniProt :	P02359 (RS7_ECOLI)
Reaction :	-

Chain :	AH
UniProt :	P0A7W7 (RS8_ECOLI)
Reaction :	-

Chain :	AI
UniProt :	P0A7X3 (RS9_ECOLI)
Reaction :	-

Chain :	AJ
UniProt :	P0A7R5 (RS10_ECOLI)
Reaction :	-

Chain :	AK
UniProt :	P0A7R9 (RS11_ECOLI)
Reaction :	-

Chain :	AL
UniProt :	P0A7S3 (RS12_ECOLI)
Reaction :	-

Chain :	AM
UniProt :	P0A7S9 (RS13_ECOLI)
Reaction :	-

Chain :	AN
UniProt :	P0AG59 (RS14_ECOLI)
Reaction :	-

Chain :	AO
UniProt :	P0ADZ4 (RS15_ECOLI)
Reaction :	-

Chain :	AP
UniProt :	P0A7T3 (RS16_ECOLI)
Reaction :	-

Chain :	AQ
UniProt :	P0AG63 (RS17_ECOLI)
Reaction :	-

Chain :	AR
UniProt :	P0A7T7 (RS18_ECOLI)
Reaction :	-

Chain :	AS
UniProt :	P0A7U3 (RS19_ECOLI)
Reaction :	-

Chain :	AT
UniProt :	P0A7U7 (RS20_ECOLI)
Reaction :	-

Chain :	AU
UniProt :	P68679 (RS21_ECOLI)
Reaction :	-

Chain :	BC
UniProt :	P60422 (RL2_ECOLI)
Reaction :	-

Chain :	BD
UniProt :	P60438 (RL3_ECOLI)
Reaction :	-

Chain :	BE
UniProt :	P60723 (RL4_ECOLI)
Reaction :	-

Chain :	BF
UniProt :	P62399 (RL5_ECOLI)
Reaction :	-

Chain :	BG
UniProt :	P0AG55 (RL6_ECOLI)
Reaction :	-

Chain :	BH
UniProt :	P0A7R1 (RL9_ECOLI)
Reaction :	-

Chain :	BI
UniProt :	P0A7J7 (RL11_ECOLI)
Reaction :	-

Chain :	BJ
UniProt :	P0AA10 (RL13_ECOLI)
Reaction :	-

Chain :	BK
UniProt :	P0ADY3 (RL14_ECOLI)
Reaction :	-

Chain :	BL
UniProt :	P02413 (RL15_ECOLI)
Reaction :	-

Chain :	BM
UniProt :	P0ADY7 (RL16_ECOLI)
Reaction :	-

Chain :	BN
UniProt :	P0AG44 (RL17_ECOLI)
Reaction :	-

Chain :	BO
UniProt :	P0C018 (RL18_ECOLI)
Reaction :	-

Chain :	BP
UniProt :	P0A7K6 (RL19_ECOLI)
Reaction :	-

Chain :	BQ
UniProt :	P0A7L3 (RL20_ECOLI)
Reaction :	-

Chain :	BR
UniProt :	P0AG48 (RL21_ECOLI)
Reaction :	-

Chain :	BS
UniProt :	P61175 (RL22_ECOLI)
Reaction :	-

Chain :	BT
UniProt :	P0ADZ0 (RL23_ECOLI)
Reaction :	-

Chain :	BU
UniProt :	P60624 (RL24_ECOLI)
Reaction :	-

Chain :	BV
UniProt :	P68919 (RL25_ECOLI)
Reaction :	-

Chain :	BW
UniProt :	P0A7L8 (RL27_ECOLI)
Reaction :	-

Chain :	BX
UniProt :	P0A7M2 (RL28_ECOLI)
Reaction :	-

Chain :	BY
UniProt :	P0A7M6 (RL29_ECOLI)
Reaction :	-

Chain :	BZ
UniProt :	P0AG51 (RL30_ECOLI)
Reaction :	-

Chain :	B0
UniProt :	P0A7N4 (RL32_ECOLI)
Reaction :	-

Chain :	B1
UniProt :	P0A7N9 (RL33_ECOLI)
Reaction :	-

Chain :	B2
UniProt :	P0A7P5 (RL34_ECOLI)
Reaction :	-

Chain :	B3
UniProt :	P0A7Q1 (RL35_ECOLI)
Reaction :	-

Chain :	B4
UniProt :	P0A7Q6 (RL36_ECOLI)
Reaction :	-

Chain :	B5
UniProt :	P0A7L0 (RL1_ECOLI)
Reaction :	-

PDB ID: 4V70

Hetero Atom Contents

Structure summary

Reaction