Het-PDB Navi2 (PDB: 4V5N)

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Color scheme of protein:

Ligands
Code	Name		Style	Show	Link
FUA	Fusidic acid				PoSSuM
GDP	Guanosine-5'-diphosphate				PoSSuM

Non-standard Residues
Code	Name	Show

Glycosylation
Code	Name	Emphasize

Modification
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Download interaction data: 4V5N

Code :

4V5N PDBj RCSB PDB PDBe

Header :

RIBOSOME

Title :

tRNA translocation on the 70S ribosome: the post- translocational translocation intermediate TI(POST)

Release Data :

2014-07-09

Compound :

mol_id	molecule	chains
1	16S RRNA	AA

mol_id	molecule	chains
2	30S RIBOSOMAL PROTEIN S2	AB

mol_id	molecule	chains
3	30S RIBOSOMAL PROTEIN S3	AC

mol_id	molecule	chains
4	30S RIBOSOMAL PROTEIN S4	AD

mol_id	molecule	chains
5	30S RIBOSOMAL PROTEIN S5	AE

mol_id	molecule	chains
6	30S RIBOSOMAL PROTEIN S6	AF

mol_id	molecule	chains
7	30S RIBOSOMAL PROTEIN S7	AG

mol_id	molecule	chains
8	30S RIBOSOMAL PROTEIN S8	AH

mol_id	molecule	chains
9	30S RIBOSOMAL PROTEIN S9	AI

mol_id	molecule	chains
10	30S RIBOSOMAL PROTEIN S10	AJ

mol_id	molecule	chains
11	30S RIBOSOMAL PROTEIN S11	AK

mol_id	molecule	chains
12	30S RIBOSOMAL PROTEIN S12	AL

mol_id	molecule	chains
13	30S RIBOSOMAL PROTEIN S13	AM

mol_id	molecule	chains
14	30S RIBOSOMAL PROTEIN S14 TYPE Z	AN

mol_id	molecule	chains
15	30S RIBOSOMAL PROTEIN S15	AO

mol_id	molecule	chains
16	30S RIBOSOMAL PROTEIN S16	AP

mol_id	molecule	chains
17	30S RIBOSOMAL PROTEIN S17	AQ

mol_id	molecule	chains
18	30S RIBOSOMAL PROTEIN S18	AR

mol_id	molecule	chains
19	30S RIBOSOMAL PROTEIN S19	AS

mol_id	molecule	chains
20	30S RIBOSOMAL PROTEIN S20	AT

mol_id	molecule	chains
21	30S RIBOSOMAL PROTEIN THX	AU

mol_id	molecule	chains
22	TRNA	AV
	other_details: TRNA WAS COPURIFIED WITH 70S RIBOSOMES

mol_id	molecule	chains
23	MRNA	AX
	other_details: MRNA WAS COPURIFIED WITH 70S RIBOSOMES

mol_id	molecule	chains
24	ELONGATION FACTOR G	AY

mol_id	molecule	chains
25	50S RIBOSOMAL PROTEIN L27	B0

mol_id	molecule	chains
26	50S RIBOSOMAL PROTEIN L28	B1

mol_id	molecule	chains	synonym
27	50S RIBOSOMAL PROTEIN L29	B2	TL5

mol_id	molecule	chains
28	50S RIBOSOMAL PROTEIN L30	B3

mol_id	molecule	chains
29	50S RIBOSOMAL PROTEIN L31	B4

mol_id	molecule	chains
30	50S RIBOSOMAL PROTEIN L32	B5

mol_id	molecule	chains
31	50S RIBOSOMAL PROTEIN L33	B6

mol_id	molecule	chains
32	50S RIBOSOMAL PROTEIN L34	B7

mol_id	molecule	chains
33	50S RIBOSOMAL PROTEIN L35	B8

mol_id	molecule	chains	synonym
34	50S RIBOSOMAL PROTEIN L36	B9	RIBOSOMAL PROTEIN B

mol_id	molecule	chains
35	23S RIBOSOMAL RNA	BA
	other_details: CHAIN A (23S RNA) HAS E.COLI RESIDUE NUMBERING, BASED ON A STRUCTURAL ALIGNMENT WITH THE CORRESPONDING E. COLI STRUCTURE IN 2AW4

mol_id	molecule	chains
36	5S RIBOSOMAL RNA	BB

mol_id	molecule	chains
37	50S RIBOSOMAL PROTEIN L1	BC

mol_id	molecule	chains
38	50S RIBOSOMAL PROTEIN L2	BD

mol_id	molecule	chains
39	50S RIBOSOMAL PROTEIN L3	BE

mol_id	molecule	chains	synonym
40	50S RIBOSOMAL PROTEIN L4	BF	L1E

mol_id	molecule	chains
41	50S RIBOSOMAL PROTEIN L5	BG

mol_id	molecule	chains
42	50S RIBOSOMAL PROTEIN L6	BH

mol_id	molecule	chains
43	50S RIBOSOMAL PROTEIN L11	BK

mol_id	molecule	chains
44	50S RIBOSOMAL PROTEIN L7/L12	BL

mol_id	molecule	chains
45	50S RIBOSOMAL PROTEIN L13	BN

mol_id	molecule	chains
46	50S RIBOSOMAL PROTEIN L14	BO

mol_id	molecule	chains
47	50S RIBOSOMAL PROTEIN L15	BP

mol_id	molecule	chains
48	50S RIBOSOMAL PROTEIN L16	BQ

mol_id	molecule	chains
49	50S RIBOSOMAL PROTEIN L17	BR

mol_id	molecule	chains	synonym
50	50S RIBOSOMAL PROTEIN L18	BS	TL24

mol_id	molecule	chains
51	50S RIBOSOMAL PROTEIN L19	BT

mol_id	molecule	chains
52	50S RIBOSOMAL PROTEIN L20	BU

mol_id	molecule	chains
53	50S RIBOSOMAL PROTEIN L21	BV

mol_id	molecule	chains
54	50S RIBOSOMAL PROTEIN L22	BW

mol_id	molecule	chains
55	50S RIBOSOMAL PROTEIN L23	BX

mol_id	molecule	chains
56	50S RIBOSOMAL PROTEIN L24	BY

mol_id	molecule	chains	synonym
57	50S RIBOSOMAL PROTEIN L25	BZ	TL5

Source :

mol_id	organism_scientific
1	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8

mol_id	organism_scientific
2	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8

mol_id	organism_scientific
3	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8

mol_id	organism_scientific
4	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8

mol_id	organism_scientific
5	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8

mol_id	organism_scientific
6	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8

mol_id	organism_scientific
7	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8

mol_id	organism_scientific
8	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8

mol_id	organism_scientific
9	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8

mol_id	organism_scientific
10	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8

mol_id	organism_scientific
11	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8

mol_id	organism_scientific
12	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8

mol_id	organism_scientific
13	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8

mol_id	organism_scientific
14	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8

mol_id	organism_scientific
15	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8

mol_id	organism_scientific
16	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8

mol_id	organism_scientific
17	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8

mol_id	organism_scientific
18	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8

mol_id	organism_scientific
19	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8

mol_id	organism_scientific
20	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8

mol_id	organism_scientific
21	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8

mol_id	organism_scientific
22	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8

mol_id	organism_scientific
23	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8

mol_id	organism_scientific	expression_system
24	THERMUS THERMOPHILUS (taxid:300852)	ESCHERICHIA COLI (taxid:469008)
	strain: HB8 atcc: 27634 expression_system_strain: BL21(DE3) expression_system_plasmid: PET-46 EK/LIC

mol_id	organism_scientific
25	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8 - MRC - MSAW1 atcc: 27634

mol_id	organism_scientific
26	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8 - MRC - MSAW1 atcc: 27634

mol_id	organism_scientific
27	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8 - MRC - MSAW1 atcc: 27634

mol_id	organism_scientific
28	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8 - MRC - MSAW1 atcc: 27634

mol_id	organism_scientific
29	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8 - MRC - MSAW1 atcc: 27634

mol_id	organism_scientific
30	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8 - MRC - MSAW1 atcc: 27634

mol_id	organism_scientific
31	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8 - MRC - MSAW1 atcc: 27634

mol_id	organism_scientific
32	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8 - MRC - MSAW1 atcc: 27634

mol_id	organism_scientific
33	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8 - MRC - MSAW1 atcc: 27634

mol_id	organism_scientific
34	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8 - MRC - MSAW1 atcc: 27634

mol_id	organism_scientific
35	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8 - MRC - MSAW1 atcc: 27634

mol_id	organism_scientific
36	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8 - MRC - MSAW1 atcc: 27634

mol_id	organism_scientific
37	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8 - MRC - MSAW1 atcc: 27634

mol_id	organism_scientific
38	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8 - MRC - MSAW1 atcc: 27634

mol_id	organism_scientific
39	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8 - MRC - MSAW1 atcc: 27634

mol_id	organism_scientific
40	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8 - MRC - MSAW1 atcc: 27634

mol_id	organism_scientific
41	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8 - MRC - MSAW1 atcc: 27634

mol_id	organism_scientific
42	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8 - MRC - MSAW1 atcc: 27634

mol_id	organism_scientific
43	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8 - MRC - MSAW1 atcc: 27634

mol_id	organism_scientific
44	ESCHERICHIA COLI (taxid:83333)
	strain: K-12

mol_id	organism_scientific
45	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8 - MRC - MSAW1 atcc: 27634

mol_id	organism_scientific
46	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8 - MRC - MSAW1 atcc: 27634

mol_id	organism_scientific
47	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8 - MRC - MSAW1 atcc: 27634

mol_id	organism_scientific
48	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8 - MRC - MSAW1 atcc: 27634

mol_id	organism_scientific
49	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8 - MRC - MSAW1 atcc: 27634

mol_id	organism_scientific
50	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8 - MRC - MSAW1 atcc: 27634

mol_id	organism_scientific
51	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8 - MRC - MSAW1 atcc: 27634

mol_id	organism_scientific
52	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8 - MRC - MSAW1 atcc: 27634

mol_id	organism_scientific
53	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8 - MRC - MSAW1 atcc: 27634

mol_id	organism_scientific
54	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8 - MRC - MSAW1 atcc: 27634

mol_id	organism_scientific
55	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8 - MRC - MSAW1 atcc: 27634

mol_id	organism_scientific
56	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8 - MRC - MSAW1 atcc: 27634

mol_id	organism_scientific
57	THERMUS THERMOPHILUS (taxid:300852)
	strain: HB8 - MRC - MSAW1 atcc: 27634

Authors :

Ratje, A.H., Loerke, J., Mikolajka, A., Bruenner, M., Hildebrand, P.W., Starosta, A.L., Doenhoefer, A., Connell, S.R., Fucini, P., Mielke, T., Whitford, P.C., Onuchic, J.N., Yu, Y., Sanbonmatsu, K.Y., Hartmann, R.K., Penczek, P.A., Wilson, D.N., Spahn, C.M.T.

Keywords :

TRANSLATION, RIBOSOME, ELONGATION CYCLE, TRNA TRANSLOCATION

Exp. method :

ELECTRON MICROSCOPY ( 7.6 Å )

Citation :

Head Swivel on the Ribosome Facilitates Translocation by Means of Intra-Subunit tRNA Hybrid Sites.

Ratje, A.H.,Loerke, J.,Mikolajka, A. et al.
(2010) Nature 468 : 713

PubMed: 21124459
DOI: 10.1038/NATURE09547

Chain :	AB
UniProt :	P80371 (RS2_THET8)
Reaction :	-

Chain :	AC
UniProt :	P80372 (RS3_THET8)
Reaction :	-

Chain :	AD
UniProt :	P80373 (RS4_THET8)
Reaction :	-

Chain :	AE
UniProt :	Q5SHQ5 (RS5_THET8)
Reaction :	-

Chain :	AF
UniProt :	Q5SLP8 (RS6_THET8)
Reaction :	-

Chain :	AG
UniProt :	P17291 (RS7_THET8)
Reaction :	-

Chain :	AH
UniProt :	Q5SHQ2 (RS8_THET8)
Reaction :	-

Chain :	AI
UniProt :	P80374 (RS9_THET8)
Reaction :	-

Chain :	AJ
UniProt :	Q5SHN7 (RS10_THET8)
Reaction :	-

Chain :	AK
UniProt :	P80376 (RS11_THET8)
Reaction :	-

Chain :	AL
UniProt :	Q5SHN3 (RS12_THET8)
Reaction :	-

Chain :	AM
UniProt :	P80377 (RS13_THET8)
Reaction :	-

Chain :	AN
UniProt :	Q5SHQ1 (RS14Z_THET8)
Reaction :	-

Chain :	AO
UniProt :	Q5SJ76 (RS15_THET8)
Reaction :	-

Chain :	AP
UniProt :	Q5SJH3 (RS16_THET8)
Reaction :	-

Chain :	AQ
UniProt :	Q5SHP7 (RS17_THET8)
Reaction :	-

Chain :	AR
UniProt :	Q5SLQ0 (RS18_THET8)
Reaction :	-

Chain :	AS
UniProt :	Q5SHP2 (RS19_THET8)
Reaction :	-

Chain :	AT
UniProt :	P80380 (RS20_THET8)
Reaction :	-

Chain :	AU
UniProt :	Q5SIH3 (RSHX_THET8)
Reaction :	-

Chain :	AY
UniProt :	Q5SHN5 (EFG_THET8)
Reaction :	-

Chain :	B0
UniProt :	P60493 (RL27_THET8)
Reaction :	-

Chain :	B1
UniProt :	P60494 (RL28_THET8)
Reaction :	-

Chain :	B2
UniProt :	Q5SHP6 (RL29_THET8)
Reaction :	-

Chain :	B3
UniProt :	Q5SHQ6 (RL30_THET8)
Reaction :	-

Chain :	B4
UniProt :	Q5SJE1 (RL31_THET8)
Reaction :	-

Chain :	B5
UniProt :	P80339 (RL32_THET8)
Reaction :	-

Chain :	B6
UniProt :	P35871 (RL33_THET8)
Reaction :	-

Chain :	B7
UniProt :	P80340 (RL34_THET8)
Reaction :	-

Chain :	B8
UniProt :	Q5SKU1 (RL35_THET8)
Reaction :	-

Chain :	B9
UniProt :	Q5SHR2 (RL36_THET8)
Reaction :	-

Chain :	BC
UniProt :	Q5SLP7 (RL1_THET8)
Reaction :	-

Chain :	BD
UniProt :	P60405 (RL2_THET8)
Reaction :	-

Chain :	BE
UniProt :	Q5SHN8 (RL3_THET8)
Reaction :	-

Chain :	BF
UniProt :	Q5SHN9 (RL4_THET8)
Reaction :	-

Chain :	BG
UniProt :	Q5SHQ0 (RL5_THET8)
Reaction :	-

Chain :	BH
UniProt :	Q5SHQ3 (RL6_THET8)
Reaction :	-

Chain :	BK
UniProt :	Q5SLP6 (RL11_THET8)
Reaction :	-

Chain :	BL
UniProt :	P0A7K2 (RL7_ECOLI)
Reaction :	-

Chain :	BN
UniProt :	P60488 (RL13_THET8)
Reaction :	-

Chain :	BO
UniProt :	Q5SHP8 (RL14_THET8)
Reaction :	-

Chain :	BP
UniProt :	Q5SHQ7 (RL15_THET8)
Reaction :	-

Chain :	BQ
UniProt :	P60489 (RL16_THET8)
Reaction :	-

Chain :	BR
UniProt :	Q9Z9H5 (RL17_THET8)
Reaction :	-

Chain :	BS
UniProt :	Q5SHQ4 (RL18_THET8)
Reaction :	-

Chain :	BT
UniProt :	P60490 (RL19_THET8)
Reaction :	-

Chain :	BU
UniProt :	P60491 (RL20_THET8)
Reaction :	-

Chain :	BV
UniProt :	P60492 (RL21_THET8)
Reaction :	-

Chain :	BW
UniProt :	Q5SHP3 (RL22_THET8)
Reaction :	-

Chain :	BX
UniProt :	Q5SHP0 (RL23_THET8)
Reaction :	-

Chain :	BY
UniProt :	Q5SHP9 (RL24_THET8)
Reaction :	-

Chain :	BZ
UniProt :	Q5SHZ1 (RL25_THET8)
Reaction :	-

PDB ID: 4V5N

Hetero Atom Contents

Structure summary

Reaction