Brand  (β version)

PDB ID: 4MQ7

Hetero Atom Contents

  The number of atoms exceeds 100,000.
  So, it can not be displayed here.

Select unit:

Select hetatm:   

close
information
centroid:
interaction residue:

Select chain:   Sequence  

Data format:   

Color scheme of protein:

Ligands
Code Name Style Show Link
CIS (15z)-N-((1s,2r,3e)-2-hydroxy-1-{[(3-O-sulfo-beta-D-galactopyranosyl)oxy]methyl}heptadec-3-enyl)tetracos-15-enamide PoSSuM
Non-standard Residues
Code Name Show
Glycosylation
Code Name Emphasize
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose
Modification
Code Name Show

Structure summary

Code : 4MQ7   PDBj   RCSB PDB   PDBe
Header : IMMUNE SYSTEM
Title : Structure of human CD1d-sulfatide
Release Data : 2013-12-18
Compound :
mol_id molecule chains synonym
1 Antigen-presenting glycoprotein CD1d, Cd1d1 protein A R3G1
fragment: human CD1d alpha1,2 domains fused with murine alpha3 domain
mutation: residues from N-terminus through 184 are human sequence, residues from 185 to C-terminus are murine sequence
mol_id molecule chains
2 Beta-2-microglobulin B
fragment: Beta-2-microglobulin
Source :
mol_id organism_scientific organism_common expression_system
1 Mus musculus  (taxid:10090) Human, mouse Trichoplusia ni  (taxid:7111)
gene: CD1D, Cd1.2, Cd1d1
expression_system_vector_type: baculovirus
mol_id organism_scientific organism_common expression_system
2 Mus musculus  (taxid:10090) Mouse Trichoplusia ni  (taxid:7111)
gene: B2m
expression_system_vector_type: baculovirus
Authors : Luoma, A.M., Adams, E.J.
Keywords : gamma-delta, T cell receptor, Humans, T cells, non-classical, lipids, CD1d, restriction, Immunoglobulin, major histocompatibility complex, antigen presentation, self-ligands, IMMUNE SYSTEM
Exp. method : X-RAY DIFFRACTION ( 2.6032 Å )
Citation :

Crystal Structure of V delta 1 T Cell Receptor in Complex with CD1d-Sulfatide Shows MHC-like Recognition of a Self-Lipid by Human gamma delta T Cells.

Luoma, A.M.,Castro, C.D.,Mayassi, T.  et al.
(2013)  Immunity  39 : 1032 - 1042

PubMed: 24239091
DOI: 10.1016/j.immuni.2013.11.001

Reaction

Chain : A
UniProt : P15813 (CD1D_HUMAN)
Reaction : -
Chain : A
UniProt : Q7TMK5 (Q7TMK5_MOUSE)
Reaction : -
Chain : B
UniProt : P01887 (B2MG_MOUSE)
Reaction : -