Brand  (β version)

PDB ID: 4KO0

Hetero Atom Contents

  The number of atoms exceeds 100,000.
  So, it can not be displayed here.

Select unit:

Select hetatm:   

close
information
centroid:
interaction residue:

Select chain:   Sequence  

Data format:   

Color scheme of protein:

Ligands
Code Name Style Show Link
EDO 1,2-ethanediol PoSSuM
JLJ 4-[(4-methoxypyrimidin-2-yl)amino]-2-[(3-methylbut-2-en-1-yl)oxy]benzonitrile PoSSuM
SO4 Sulfate ion PoSSuM
Non-standard Residues
Code Name Show
Glycosylation
Code Name Emphasize
Modification
Code Name Show

Structure summary

Code : 4KO0   PDBj   RCSB PDB   PDBe
Header : HYDROLASE/HYDROLASE INHIBITOR
Title : CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE (RT) IN COMPLEX WITH an anilinylpyrimidine derivative (JLJ-135)
Release Data : 2013-08-14
Compound :
mol_id molecule chains synonym
1 HIV-1 reverse transcriptase, p66 subunit A Reverse transcriptase/ribonuclease H, Exoribonuclease H, p66 RT, p51 RT
ec: 2.7.7.49
fragment: p66
mutation: K172A, K173A, C280S
mol_id molecule chains synonym
2 HIV-1 reverse transcriptase, p51 subunit B Reverse transcriptase/ribonuclease H, Exoribonuclease H, p51 RT
ec: 2.7.7.49
fragment: p51
mutation: C280S
Source :
mol_id organism_scientific organism_common expression_system
1 Human immunodeficiency virus type 1  (taxid:11678) HIV-1 Escherichia coli  (taxid:562)
strain: 1B1
gene: gag-pol
expression_system_strain: BH10
expression_system_vector_type: PLASMID
expression_system_plasmid: PRT52A
mol_id organism_scientific organism_common expression_system
2 Human immunodeficiency virus type 1  (taxid:11678) HIV-1 Escherichia coli  (taxid:562)
strain: 1B1
gene: gag-pol
expression_system_strain: BH10
expression_system_vector_type: PLASMID
expression_system_plasmid: PRT52A
Authors : Das, K., Bauman, J.D., Arnold, E.
Keywords : P51/P66, HETERO DIMER, NNRTI, NONNUCLEOSIDE INHIBITOR, AIDS, HIV, DNA RECOMBINATION, RNA-DIRECTED DNA POLYMERASE, DNA POLYMERASE, ENDONUCLEASE, HYDROLASE, MULTIFUNCTIONAL ENZYME, TRANSFERASE, HYDROLASE-INHIBITOR COMPLEX, HYDROLASE-HYDROLASE INHIBITOR complex
Exp. method : X-RAY DIFFRACTION ( 1.95 Å )
Citation :

Extension into the entrance channel of HIV-1 reverse transcriptase-Crystallography and enhanced solubility.

Bollini, M.,Frey, K.M.,Cisneros, J.A.  et al.
(2013)  Bioorg.Med.Chem.Lett.  23 : 5209 - 5212

PubMed: 23899617
DOI: 10.1016/j.bmcl.2013.06.093

Reaction

Chain : B
UniProt : P03366 (POL_HV1B1)
Reaction: EC: Evidence:
Physiological Direction:
Specific for a P1 residue that is hydrophobic, and P1' variable, but often Pro. 3.4.23.16 PROSITE-ProRule:PRU00275
-
3'-end directed exonucleolytic cleavage of viral RNA-DNA hybrid. 3.1.13.2 ECO:0000250
-
[Reverse transcriptase/ribonuclease H]
Endohydrolysis of RNA in RNA/DNA hybrids. Three different cleavage modes: 1. sequence-specific internal cleavage of RNA. Human immunodeficiency virus type 1 and Moloney murine leukemia virus enzymes prefer to cleave the RNA strand one nucleotide away from the RNA-DNA junction. 2. RNA 5'-end directed cleavage 13-19 nucleotides from the RNA end. 3. DNA 3'-end directed cleavage 15-20 nucleotides away from the primer terminus. 		3.1.26.13 PubMed:2476069
-
[Reverse transcriptase/ribonuclease H]
a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1) 		2.7.7.49 PROSITE- ProRule:PRU00405, PubMed:2476069
-
[Reverse transcriptase/ribonuclease H]
a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1) 		2.7.7.7 PROSITE- ProRule:PRU00405, PubMed:2476069
-