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Ligands
Code Name Style Show Link
0OH North-methanocarba-2'-deoxyadenosine triphosphate
CA Calcium ion
Non-standard Residues
Code Name Show
Glycosylation
Code Name Emphasize
Modification
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Code : 4GC6   PDBj   RCSB PDB   PDBe
Header : TRANSFERASE/DNA
Title : Crystal structure of Dpo4 in complex with N-MC-dAMP opposite dT
Release Data : 2012-10-24
Compound :
mol_id molecule chains synonym
1 DNA polymerase IV A Pol IV
ec: 2.7.7.7
mol_id molecule chains
2 DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*C)-3') P
other_details: primer DNA
mol_id molecule chains
3 DNA (5'-D(*TP*CP*AP*TP*GP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3') T
other_details: template DNA
Source :
mol_id organism_scientific expression_system
1 Sulfolobus solfataricus P2  (taxid:273057) Escherichia coli  (taxid:469008)
strain: P2
gene: dbh, dpo4, SSO2448
expression_system_strain: BL21 (DE3)
expression_system_vector_type: plasmid
expression_system_plasmid: pET22b(+)
mol_id organism_scientific
2
synthetic: yes
other_details: chemically synthesized oligonucleotide
mol_id organism_scientific
3
synthetic: yes
other_details: chemically synthesized oligonucleotide
Authors : Eoff, R.L., Ketkar, A., Banerjee, S., Zafar, M.K.
Keywords : DNA polymerase, TRANSFERASE-DNA complex
Exp. method : X-RAY DIFFRACTION ( 2.895 Å )
Citation :

Differential furanose selection in the active sites of archaeal DNA polymerases probed by fixed-conformation nucleotide analogues.

Ketkar, A.,Zafar, M.K.,Banerjee, S.  et al.
(2012)  Biochemistry  51 : 9234 - 9244

PubMed: 23050956
DOI: 10.1021/bi301043k

Chain : A
UniProt : Q97W02 (DPO4_SACS2)
Reaction: EC: Evidence:
Physiological Direction:
a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1) 2.7.7.7 -
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