Het-PDB Navi2 (PDB: 4EI5)

The number of atoms exceeds 100,000.
So, it can not be displayed here.

Select unit:

Select hetatm:

information

centroid:

interaction residue:

Select chain: Sequence Hide other chain(s)

Data format:

Color scheme of protein:

Ligands
Code	Name		Style	Show	Link
FLC	Citrate anion				PoSSuM
CIS	(15z)-N-((1s,2r,3e)-2-hydroxy-1-{[(3-O-sulfo-beta-D-galactopyranosyl)oxy]methyl}heptadec-3-enyl)tetracos-15-enamide				PoSSuM

Non-standard Residues
Code	Name	Show

Glycosylation
Code	Name	Emphasize
NAG	2-acetamido-2-deoxy-beta-D-glucopyranose
BMA	Beta-D-mannopyranose
MAN	Alpha-D-mannopyranose

Modification
Code	Name	Show

Download interaction data: 4EI5

Code :

4EI5 PDBj RCSB PDB PDBe

Header :

IMMUNE SYSTEM

Title :

Crystal Structure of XV19 TCR in complex with CD1d-sulfatide C24:1

Release Data :

2012-07-25

Compound :

mol_id	molecule	chains	synonym
1	Antigen-presenting glycoprotein CD1d1	A,E	CD1d
	fragment: UNP residues 19-297

mol_id	molecule	chains
2	Beta-2-microglobulin	B,F
	fragment: UNP residues 21-119

mol_id	molecule	chains
3	Valpha1 XV19 Type II Natural Killer T cell receptor (mouse variable domain, human constant domain)	C,G
	fragment: extracellular domain (SEE REMARK 999)

mol_id	molecule	chains
4	Vbeta16 XV19 Type II Natural Killer T cell receptor (mouse variable domain, human constant domain)	D,H
	fragment: extracellular domain (SEE REMARK 999)

Source :

mol_id	organism_scientific	organism_common	expression_system
1	Mus musculus (taxid:10090)	Mouse	Trichoplusia ni (taxid:7111)
	gene: Cd1d1, Cd1.1 expression_system_vector_type: baculovirus expression_system_plasmid: pFasBacpHp10

mol_id	organism_scientific	organism_common	expression_system
2	Mus musculus (taxid:10090)	Mouse	Trichoplusia ni (taxid:7111)
	gene: B2m expression_system_vector_type: baculovirus expression_system_plasmid: pFasBacpHp10

mol_id	organism_scientific	organism_common	expression_system
3	Mus musculus, Homo sapiens (taxid:10090, 9606)	Mouse, human	Escherichia coli (taxid:469008)
	expression_system_strain: BL21(DE3) expression_system_vector_type: plasmid expression_system_plasmid: pET30

mol_id	organism_scientific	organism_common	expression_system
4	Mus musculus, Homo sapiens (taxid:10090, 9606)	Mouse, human	Escherichia coli (taxid:469008)
	expression_system_strain: BL21(DE3) expression_system_vector_type: plasmid expression_system_plasmid: pET30

Authors :

Patel, O., Gras, S., Rossjohn, J.

Keywords :

sulfatide, lipid, CD1d, NKT typeII, TCR, IMMUNE SYSTEM

Exp. method :

X-RAY DIFFRACTION ( 3.1000 Å )

Citation :

Recognition of CD1d-sulfatide mediated by a type II natural killer T cell antigen receptor.

Patel, O.,Pellicci, D.G.,Gras, S. et al.
(2012) Nat.Immunol. 13 : 857 - 863

PDB ID: 4EI5