Brand  (β version)

PDB ID: 4CDM

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Ligands
Code Name Style Show Link
FAD Flavin-adenine dinucleotide PoSSuM
FO1 1-deoxy-1-(8-hydroxy-2,4-dioxo-3,4-dihydropyrimido[4,5-B]quinolin-10(2h)-yl)-D-ribitol PoSSuM
GOL Glycerol PoSSuM
SO4 Sulfate ion PoSSuM
Non-standard Residues
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Structure summary

Code : 4CDM   PDBj   RCSB PDB   PDBe
Header : LYASE
Title : Crystal structure of M. mazei photolyase soaked with synthetic 8-HDF
Release Data : 2014-05-21
Compound :
mol_id molecule chains synonym
1 DEOXYRIBODIPYRIMIDINE PHOTOLYASE A CLASS II CPD PHOTOLYASE
ec: 4.1.99.3
fragment: RESIDUES 3-464
Source :
mol_id organism_scientific expression_system
1 METHANOSARCINA MAZEI  (taxid:192952) ESCHERICHIA COLI  (taxid:469008)
strain: GO1
expression_system_strain: BL21(DE3)
expression_system_variant: GOLD
expression_system_vector_type: PLASMID
expression_system_vector: PET28A
Authors : Kiontke, S., Batschauer, A., Essen, L.-O.
Keywords : LYASE, DNA REPAIR, ANTENNA CHROMOPHORE
Exp. method : X-RAY DIFFRACTION ( 2.70 Å )
Citation :

Structural and Evolutionary Aspects of Antenna Chromophore Usage by Class II Photolyases.

Kiontke, S.,Gnau, P.,Haselsberger, R.  et al.
(2014)  J.Biol.Chem.  289 : 19659

PubMed: 24849603
DOI: 10.1074/JBC.M113.542431

Reaction

Chain : A
UniProt : Q8PYK9 (Q8PYK9_METMA)
Reaction: EC: Evidence:
Physiological Direction:
cyclobutadipyrimidine (in DNA) = 2 pyrimidine residues (in DNA). 4.1.99.3 ARBA:ARBA00033999
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Cofactor: Evidence: Note:
FAD ECO:0000256 | ARBA:ARBA00001974
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coenzyme F420-(gamma-Glu)n ECO:0000256 | ARBA:ARBA00053026
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