Het-PDB Navi2 (PDB: 4APQ)

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Ligands
Code	Name		Style	Show	Link
CIS	(15z)-N-((1s,2r,3e)-2-hydroxy-1-{[(3-O-sulfo-beta-D-galactopyranosyl)oxy]methyl}heptadec-3-enyl)tetracos-15-enamide				PoSSuM

Non-standard Residues
Code	Name	Show

Glycosylation
Code	Name	Emphasize
BMA	Beta-D-mannopyranose
MAN	Alpha-D-mannopyranose
NAG	2-acetamido-2-deoxy-beta-D-glucopyranose

Modification
Code	Name	Show

Download interaction data: 4APQ

Code :

4APQ PDBj RCSB PDB PDBe

Header :

IMMUNE SYSTEM

Title :

Crystal structure of autoreactive-Valpha14-Vbeta6 NKT TCR in complex with CD1d-sulfatide

Release Data :

2013-04-24

Compound :

mol_id	molecule	chains	synonym
1	ANTIGEN-PRESENTING GLYCOPROTEIN CD1D1	A	CD1D.1, CD1D
	fragment: EXTRACELLULAR DOMAIN, RESIDUES 19-297

mol_id	molecule	chains
2	BETA-2-MICROGLOBULIN	B

mol_id	molecule	chains
3	MOUSE NKT TCR VALPHA14, HUMAN NKT TCR VALPHA14	C
	fragment: MOUSE VARIABLE DOMAIN, RESIDUES 1-121, HUMAN CONSTANT DOMAIN, RESIDUES 122-212

mol_id	molecule	chains
4	MOUSE NKT TCR AUTOREACTIVE-VBETA6, HUMAN NKT TCR AUTOREACTIVE-VBETA6	D
	fragment: MOUSE VARIABLE DOMAIN, RESIDUES 1-121, HUMAN CONSTANT DOMAIN, RESIDUES 122-247

Source :

mol_id	organism_scientific	organism_common	expression_system
1	MUS MUSCULUS (taxid:10090)	HOUSE MOUSE	TRICHOPLUSIA NI (taxid:7111)
	expression_system_common: CABBAGE LOOPER expression_system_cell_line: High Five expression_system_vector_type: PLASMID expression_system_vector: PFASTBAC DUAL

mol_id	organism_scientific	organism_common	expression_system
2	MUS MUSCULUS (taxid:10090)	HOUSE MOUSE	TRICHOPLUSIA NI (taxid:7111)
	expression_system_common: CABBAGE LOOPER expression_system_cell_line: High Five expression_system_vector_type: PLASMID expression_system_vector: PFASTBAC DUAL

mol_id	organism_scientific	organism_common	expression_system
3	MUS MUSCULUS (taxid:10090)	HOUSE MOUSE	ESCHERICHIA COLI BL21(DE3) (taxid:469008)
	expression_system_variant: RIL expression_system_vector_type: PLASMID expression_system_vector: PET30B

mol_id	organism_scientific	organism_common	expression_system
4	MUS MUSCULUS (taxid:10090)	HOUSE MOUSE	ESCHERICHIA COLI BL21(DE3) (taxid:469008)
	expression_system_variant: RIL expression_system_vector_type: PLASMID expression_system_vector: PET30B

Authors :

Clarke, A.J., Le Nours, J., Rossjohn, J.

Keywords :

IMMUNITY, APC CELL SURFACE, IMMUNE SYSTEM

Exp. method :

X-RAY DIFFRACTION ( 3.00 Å )

Citation :

Type-II Natural Killer T Cell Antigen Receptor Mediated Recognition of Cd1D-Sulfatide

Patel, O.,Pellicci, D.G.,Gras, S. et al.
To be Published

PDB ID: 4APQ