Brand  (β version)

PDB ID: 486D

Hetero Atom Contents

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Ligands
Code Name Style Show Link
IR Iridium ion PoSSuM
Non-standard Residues
Code Name Show
1MA 6-hydro-1-methyladenosine-5'-monophosphate
1MG 1n-methylguanosine-5'-monophosphate
2MG 2n-methylguanosine-5'-monophosphate
5MC 5-methylcytidine-5'-monophosphate
5MU 5-methyluridine 5'-monophosphate
7MG 7n-methyl-8-hydroguanosine-5'-monophosphate
H2U 5,6-dihydrouridine-5'-monophosphate
M2G N2-dimethylguanosine-5'-monophosphate
OMC O2'-methylycytidine-5'-monophosphate
PSU Pseudouridine-5'-monophosphate
YYG 4-(3-[5-O-phosphonoribofuranosyl]-4,6-dimethyl-8-oxo-4,8-dihydro-3h-1,3,4,5,7a-pentaaza-S-indacen-ylamino-butyric acid methyl ester
Glycosylation
Code Name Emphasize
Modification
Code Name Show

Structure summary

Code : 486D   PDBj   RCSB PDB   PDBe
Header : RIBOSOME
Title : X-RAY CRYSTAL STRUCTURES OF 70S RIBOSOME FUNCTIONAL COMPLEXES
Release Data : 1999-10-04
Compound :
mol_id molecule chains
1 P-SITE TRNA OF 70S RIBOSOME A
mol_id molecule chains
2 P-SITE CODON OF 70S RIBOSOME B
mol_id molecule chains
3 A-SITE TRNA OF 70S RIBOSOME C
mol_id molecule chains
4 A-SITE CODON OF 70S RIBOSOME D
mol_id molecule chains
5 E-SITE TRNA OF 70S RIBOSOME E
mol_id molecule chains
6 PENULTIMATE STEM OF 16S RRNA IN THE 70S RIBOSOME F
mol_id molecule chains
7 900 STEM-LOOP OF 16S RRNA IN THE 70S RIBOSOME G
Source :
mol_id organism_scientific
1 Escherichia coli  (taxid:562)
mol_id organism_scientific
2
synthetic: yes
other_details: SEQUENCE FROM T. THERMOPHILUS
mol_id organism_scientific organism_common
3 Saccharomyces cerevisiae  (taxid:4932) Baker's yeast
mol_id organism_scientific
4
synthetic: yes
other_details: SEQUENCE FROM T. THERMOPHILUS
mol_id organism_scientific
5 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
6 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
7 Thermus thermophilus  (taxid:274)
Authors : Cate, J.H., Yusupov, M.M., Yusupova, G.Zh., Earnest, T.N., Noller, H.F.
Keywords : FUNCTIONAL MODELS OF 70S RIBOSOME, TRNA, RIBOSOME
Exp. method : X-RAY DIFFRACTION ( 7.5 Å )
Citation :

X-ray crystal structures of 70S ribosome functional complexes.

Cate, J.H.,Yusupov, M.M.,Yusupova, G.Z.  et al.
(1999)  Science  285 : 2095 - 2104

PubMed: 10497122
DOI: 10.1126/science.285.5436.2095

Identification of an RNA-Protein Bridge Spanning the Ribosomal Subunit Interface

Culver, G.M.,Cate, J.H.,Yusupova, G.Z.  et al.
(1999)  Science  285 : 2133 - 2135

DOI: 10.1126/science.285.5436.2133