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Ligands
Code Name Style Show Link
C8P N-{(1s,2s,3r)-1-[(alpha-D-galactopyranosyloxy)methyl]-2,3-dihydroxyheptadecyl}-8-phenyloctanamide
EDO 1,2-ethanediol
PG4 Tetraethylene glycol
PLM Palmitic acid
Non-standard Residues
Code Name Show
Glycosylation
Code Name Emphasize
BMA Beta-D-mannopyranose
FUC Alpha-L-fucopyranose
MAN Alpha-D-mannopyranose
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose
Modification
Code Name Show
Code : 3GMR   PDBj   RCSB PDB   PDBe
Header : IMMUNE SYSTEM
Title : Structure of mouse CD1d in complex with C8Ph, different space group
Release Data : 2009-11-10
Compound :
mol_id molecule chains
1 T-cell surface glycoprotein CD1d1 A
fragment: UNP residues 19-297
mol_id molecule chains
2 Beta-2 microglobulin B
fragment: UNP residues 21-119
Source :
mol_id organism_scientific organism_common expression_system
1 Mus musculus  (taxid:10090) Mouse Spodoptera frugiperda  (taxid:7108)
gene: Cd1d1, Cd1.1
expression_system_strain: SF9
expression_system_vector_type: Baculovirus
expression_system_plasmid: pAcUW51
mol_id organism_scientific organism_common expression_system
2 Mus musculus  (taxid:10090) Mouse Spodoptera frugiperda  (taxid:7108)
gene: B2m
expression_system_strain: SF9
expression_system_vector_type: Baculovirus
expression_system_plasmid: pAcUW51
Authors : Schiefner, A., Wilson, I.A.
Keywords : CD1, NKT cell, glycolipid, antigen presentation, Immune System
Exp. method : X-RAY DIFFRACTION ( 1.90 Å )
Citation :

Structural evaluation of potent NKT cell agonists: implications for design of novel stimulatory ligands.

Schiefner, A.,Fujio, M.,Wu, D.  et al.
(2009)  J.Mol.Biol.  394 : 71 - 82

PubMed: 19732779
DOI: 10.1016/j.jmb.2009.08.061

Chain : A
UniProt : P11609 (CD1D1_MOUSE)
Reaction : -
Chain : B
UniProt : Q91XJ8 (B2MG_MOUSE)
Reaction : -