Brand  (β version)

PDB ID: 3EJM

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Ligands
Code Name Style Show Link
GDP Guanosine-5'-diphosphate PoSSuM
MG Magnesium ion PoSSuM
Non-standard Residues
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Glycosylation
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Structure summary

Code : 3EJM   PDBj   RCSB PDB   PDBe
Header : TRANSFERASE
Title : Crystal structure of the mimivirus NDK +Kpn mutant complexed with GDP
Release Data : 2009-08-25
Compound :
mol_id molecule chains synonym
1 Nucleoside diphosphate kinase A,B NDP kinase, NDK
ec: 2.7.4.6
mutation: residues 91 to 94 [NILT] replaced with [NTNPLASA]
Source :
mol_id organism_scientific expression_system
1 Acanthamoeba polyphaga mimivirus  (taxid:212035) Escherichia coli  (taxid:562)
gene: NDK, MIMI_R418
expression_system_strain: Rosetta(DE3)pLysS
expression_system_vector_type: plasmid
expression_system_plasmid: pDIGS02
Authors : Jeudy, S., Lartigue, A., Claverie, J.M., Abergel, C.
Keywords : NDK Mimivirus phosphotransferase nucleotide binding, ATP-binding, Kinase, Magnesium, Metal-binding, Nucleotide metabolism, Nucleotide-binding, Phosphoprotein, Transferase
Exp. method : X-RAY DIFFRACTION ( 1.950 Å )
Citation :

Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase.

Jeudy, S.,Lartigue, A.,Claverie, J.M.  et al.
(2009)  J.Virol.  83 : 7142 - 7150

PubMed: 19439473
DOI: 10.1128/JVI.00511-09

Reaction

Chain : A, B
UniProt : Q5UQL3 (NDK_MIMIV)
Reaction: EC: Evidence:
Physiological Direction:
a 2'-deoxyribonucleoside 5'-diphosphate + ATP = a 2'- deoxyribonucleoside 5'-triphosphate + ADP 2.7.4.6 PROSITE- ProRule:PRU10030
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a ribonucleoside 5'-diphosphate + ATP = a ribonucleoside 5'- triphosphate + ADP 2.7.4.6 PROSITE-ProRule:PRU10030
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