Brand  (β version)

PDB ID: 3B05

Hetero Atom Contents

  The number of atoms exceeds 100,000.
  So, it can not be displayed here.

Select unit:

Select hetatm:   

close
information
centroid:
interaction residue:

Select chain:   Sequence  

Data format:   

Color scheme of protein:

Ligands
Code Name Style Show Link
FNR 1-deoxy-1-(7,8-dimethyl-2,4-dioxo-3,4-dihydro-2h-benzo[G]pteridin-1-id-10(5h)-yl)-5-O-phosphonato-D-ribitol PoSSuM
IPE 3-methylbut-3-enyl trihydrogen diphosphate PoSSuM
MG Magnesium ion PoSSuM
Non-standard Residues
Code Name Show
Glycosylation
Code Name Emphasize
Modification
Code Name Show

Structure summary

Code : 3B05   PDBj   RCSB PDB   PDBe
Header : ISOMERASE
Title : Crystal structure of Sulfolobus shibatae isopentenyl diphosphate isomerase in complex with reduced FMN and IPP at 2.2A resolution.
Release Data : 2011-11-02
Compound :
mol_id molecule chains synonym
1 Isopentenyl-diphosphate delta-isomerase A,B,C,D IPP isomerase, Isopentenyl pyrophosphate isomerase
ec: 5.3.3.2
Source :
mol_id organism_scientific expression_system
1 Sulfolobus shibatae  (taxid:2286) Escherichia coli  (taxid:562)
gene: fni, idi
expression_system_vector_type: PLASMID
expression_system_plasmid: PET-15B
Authors : Unno, H., Nagai, T., Hemmi, H.
Keywords : TYPE 2, IDI, FMN, ISOPENTENYL DIPHOSPHATE ISOMERASE, IPP, ISOMERASE
Exp. method : X-RAY DIFFRACTION ( 2.20 Å )
Citation :

Covalent modification of reduced flavin mononucleotide in type-2 isopentenyl diphosphate isomerase by active-site-directed inhibitors.

Nagai, T.,Unno, H.,Janczak, M.W.  et al.
(2011)  Proc.Natl.Acad.Sci.USA  108 : 20461 - 20466

PubMed: 22158896
DOI: 10.1073/pnas.1115749108

Reaction

Chain : A, B, C, D
UniProt : P61615 (IDI2_SACSH)
Reaction: EC: Evidence:
Physiological Direction:
isopentenyl diphosphate = dimethylallyl diphosphate 5.3.3.2 HAMAP-Rule:MF_00354, PubMed:22158896
-