Brand  (β version)

PDB ID: 3AYZ

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Ligands
Code Name Style Show Link
3NI Nickel (III) ion PoSSuM
CMO Carbon monoxide PoSSuM
CYN Cyanide ion PoSSuM
F3S Fe3-s4 cluster PoSSuM
F4S Fe4-s3 cluster PoSSuM
FE2 Fe (II) ion PoSSuM
GOL Glycerol PoSSuM
MG Magnesium ion PoSSuM
O Oxygen atom PoSSuM
SF3 Fe4-s3 cluster PoSSuM
SF4 Iron/sulfur cluster PoSSuM
Non-standard Residues
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Glycosylation
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Structure summary

Code : 3AYZ   PDBj   RCSB PDB   PDBe
Header : OXIDOREDUCTASE
Title : Membrane-bound respiratory [NiFe] hydrogenase from Hydrogenovibrio marinus in an air-oxidized condition
Release Data : 2011-10-12
Compound :
mol_id molecule chains synonym
1 Membrane-bound hydrogenase large subunit A,C MEMBRANE-BOUND RESPIRATORY NI-FE HYDROGENASE LARGE SUBUNIT
ec: 1.12.5.1
mol_id molecule chains synonym
2 Membrane-bound hydrogenase small subunit B,D MEMBRANE-BOUND RESPIRATORY NI-FE HYDROGENASE SMALL SUBUNIT
ec: 1.12.5.1
fragment: UNP residues 41-323
Source :
mol_id organism_scientific
1 Hydrogenovibrio marinus  (taxid:28885)
strain: MH-110
mol_id organism_scientific
2 Hydrogenovibrio marinus  (taxid:28885)
strain: MH-110
Authors : Shomura, Y., Yoon, K.S., Nishihara, H., Higuchi, Y.
Keywords : OXIDOREDUCTASE, MEMBRANE-BOUND NI-FE HYDROGENASE
Exp. method : X-RAY DIFFRACTION ( 1.22 Å )
Citation :

Structural basis for a [4Fe-3S] cluster in the oxygen-tolerant membrane-bound [NiFe]-hydrogenase

Shomura, Y.,Yoon, K.S.,Nishihara, H.  et al.
(2011)  Nature  479 : 253 - 256

PubMed: 22002607
DOI: 10.1038/nature10504

Reaction

Chain : A, C
UniProt : F2Z6J6 (F2Z6J6_HYDMR)
Reaction: EC: Evidence:
Physiological Direction:
H2 + A = AH2 1.12.99.6 ARBA:ARBA00048757
-
Cofactor: Evidence: Note:
Fe cation ECO:0000256 | PIRSR:PIRSR601501-1
-
Ni(2+) ECO:0000256 | ARBA:ARBA00001967
ECO:0000256 | PIRSR:PIRSR601501-1
-
Chain : B, D
UniProt : F2Z6J5 (F2Z6J5_HYDMR)
Reaction: EC: Evidence:
Physiological Direction:
H2 + A = AH2 1.12.99.6 ARBA:ARBA00048757
-
Cofactor: Evidence: Note:
[3Fe-4S] cluster ECO:0000256 | ARBA:ARBA00001927
-
[4Fe-4S] cluster ECO:0000256 | ARBA:ARBA00001966
-