Brand  (β version)

PDB ID: 3ZFS

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Ligands
Code Name Style Show Link
F42 Coenzyme f420 PoSSuM
FAD Flavin-adenine dinucleotide PoSSuM
FCO Carbonmonoxide-(dicyano) iron PoSSuM
FE2 Fe (II) ion PoSSuM
NI Nickel (II) ion PoSSuM
SF4 Iron/sulfur cluster PoSSuM
Non-standard Residues
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Structure summary

Code : 3ZFS   PDBj   RCSB PDB   PDBe
Header : OXIDOREDUCTASE
Title : Cryo-EM structure of the F420-reducing NiFe-hydrogenase from a methanogenic archaeon with bound substrate
Release Data : 2013-03-06
Compound :
mol_id molecule chains synonym
1 F420-REDUCING HYDROGENASE, SUBUNIT ALPHA A FRHA, COENZYME F420 HYDROGENASE ALPHA SUBUNIT
ec: 1.12.98.1
other_details: FRHA CONTAINS A NIFE CENTER
mol_id molecule chains synonym
2 F420-REDUCING HYDROGENASE, SUBUNIT GAMMA B FRHG, COENZYME F420 HYDROGENASE GAMMA SUBUNIT
ec: 1.12.98.1
other_details: FRHG CONTAINS THREE 4FE4S CLUSTERS
mol_id molecule chains synonym
3 F420-REDUCING HYDROGENASE, SUBUNIT BETA C FRHB, COENZYME F420 HYDROGENASE BETA SUBUNIT
ec: 1.12.98.1
other_details: FRHB CONTAINS FAD AND A 4FE4S CLUSTER
Source :
mol_id organism_scientific
1 METHANOTHERMOBACTER MARBURGENSIS  (taxid:145263)
strain: DSM 2133
mol_id organism_scientific
2 METHANOTHERMOBACTER MARBURGENSIS  (taxid:145263)
strain: DSM 2133
mol_id organism_scientific
3 METHANOTHERMOBACTER MARBURGENSIS  (taxid:145263)
strain: DSM 2133
Authors : Mills, D.J., Vitt, S., Strauss, M., Shima, S., Vonck, J.
Keywords : OXIDOREDUCTASE, METHANOGENESIS
Exp. method : ELECTRON MICROSCOPY ( 4 Å )
Citation :

De Novo Modeling of the F420-Reducing [Nife]-Hydrogenase from a Methanogenic Archaeon by Cryo-Electron Microscopy

Mills, D.J.,Vitt, S.,Strauss, M.  et al.
(2013)  Elife  2 : 218

PubMed: 23483797
DOI: 10.7554/ELIFE.00218

Reaction

Chain : A
UniProt : D9PYF9 (D9PYF9_METTM)
Reaction : -
Cofactor: Evidence: Note:
Fe cation ECO:0000256 | PIRSR:PIRSR601501-1
-
Ni(2+) ECO:0000256 | PIRSR:PIRSR601501-1
-
Chain : B
UniProt : D9PYF7 (D9PYF7_METTM)
Reaction : -
Chain : C
UniProt : D9PYF6 (D9PYF6_METTM)
Reaction : -
Cofactor: Evidence: Note:
FAD ECO:0000256 | ARBA:ARBA00001974
-