Het-PDB Navi2 (PDB: 3UBX)

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Ligands
Code	Name		Style	Show	Link
09N	(11z,14z)-N-[(2s,3s,4r)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxyoctadecan-2-yl]icosa-11,14-dienamide				PoSSuM

Non-standard Residues
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Glycosylation
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NAG	2-acetamido-2-deoxy-beta-D-glucopyranose

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Download interaction data: 3UBX

Code :

3UBX PDBj RCSB PDB PDBe

Header :

IMMUNE SYSTEM

Title :

Crystal structure of the mouse CD1d-C20:2-aGalCer-L363 mAb Fab complex

Release Data :

2011-11-16

Compound :

mol_id	molecule	chains	synonym
1	Antigen-presenting glycoprotein CD1d1	A,D	T cell surface glycoprotein CD1d
	fragment: UNP residues 19-297

mol_id	molecule	chains
2	Beta-2-microglobulin	B,E
	fragment: UNP residues 21-119

mol_id	molecule	chains
3	L363 light chain (IGKV13-84*01)	L,I
	fragment: Fab

mol_id	molecule	chains
4	L363 heavy chain (IGHV9-4*02)	H,G
	fragment: Fab

Source :

mol_id	organism_scientific	organism_common	expression_system
1	Mus musculus (taxid:10090)	Mouse	Spodoptera frugiperda (taxid:7108)
	gene: Cd1.1, CD1d, Cd1d1 expression_system_common: Fall armyworm expression_system_strain: Sf9 expression_system_vector_type: baculovirus expression_system_plasmid: pBACp10pH

mol_id	organism_scientific	organism_common	expression_system
2	Mus musculus (taxid:10090)	Mouse	Spodoptera frugiperda (taxid:7108)
	gene: B2m, CD1d expression_system_common: Fall armyworm expression_system_strain: Sf9 expression_system_vector_type: baculovirus expression_system_plasmid: pBACp10pH

mol_id	organism_scientific	organism_common
3	Mus musculus (taxid:10090)	Mouse
	strain: BALB/c

mol_id	organism_scientific	organism_common
4	Mus musculus (taxid:10090)	Mouse
	strain: BALB/c

Authors :

Yu, E.D., Zajonc, D.M.

Keywords :

Immunology, mouse CD1d/NKT, mAb, IMMUNE SYSTEM

Exp. method :

X-RAY DIFFRACTION ( 3.10 Å )

Citation :

Structural basis for the recognition of C20:2-alpha GalCer by the invariant natural killer T cell receptor-like antibody L363.

Yu, E.D.,Girardi, E.,Wang, J. et al.
(2012) J.Biol.Chem. 287 : 1269 - 1278

PDB ID: 3UBX