Brand  (β version)

PDB ID: 3J7Y

Hetero Atom Contents

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Ligands
Code Name Style Show Link
A Adenosine-5'-monophosphate PoSSuM
MG Magnesium ion PoSSuM
ZN Zinc ion PoSSuM
Non-standard Residues
Code Name Show
Glycosylation
Code Name Emphasize
Modification
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Structure summary

Code : 3J7Y   PDBj   RCSB PDB   PDBe
Header : RIBOSOME
Title : Structure of the large ribosomal subunit from human mitochondria
Release Data : 2014-10-15
Compound :
mol_id molecule chains
1 16S rRNA A
mol_id molecule chains
2 mt-tRNAVal B
mol_id molecule chains
3 uL2 D
mol_id molecule chains
4 uL3 E
mol_id molecule chains
5 uL4 F
mol_id molecule chains
6 bL9 H
mol_id molecule chains
7 uL10 I
mol_id molecule chains
8 uL11 J
mol_id molecule chains
9 uL13 K
mol_id molecule chains
10 uL14 L
mol_id molecule chains
11 uL15 M
mol_id molecule chains
12 uL16 N
mol_id molecule chains
13 bL17 O
mol_id molecule chains
14 uL18 P
mol_id molecule chains
15 bL19 Q
mol_id molecule chains
16 bL20 R
mol_id molecule chains
17 bL21 S
mol_id molecule chains
18 uL22 T
mol_id molecule chains
19 uL23 U
mol_id molecule chains
20 uL24 V
mol_id molecule chains
21 bL27 W
mol_id molecule chains
22 bL28 X
mol_id molecule chains
23 uL29 Y
mol_id molecule chains
24 uL30 Z
mol_id molecule chains
25 bL32 0
mol_id molecule chains
26 bL33 1
mol_id molecule chains
27 bL34 2
mol_id molecule chains
28 bL35 3
mol_id molecule chains
29 bL36 4
mol_id molecule chains
30 mL37 5
mol_id molecule chains
31 mL38 6
mol_id molecule chains
32 mL39 7
mol_id molecule chains
33 mL40 8
mol_id molecule chains
34 mL41 9
mol_id molecule chains
35 mL42 a
mol_id molecule chains
36 mL43 b
mol_id molecule chains
37 mL44 c
mol_id molecule chains
38 mL45 d
mol_id molecule chains
39 mL46 e
mol_id molecule chains
40 mL48 f
mol_id molecule chains
41 mL49 g
mol_id molecule chains
42 mL50 h
mol_id molecule chains
43 mL51 i
mol_id molecule chains
44 mL52 j
mol_id molecule chains
45 mL53 k
mol_id molecule chains
46 mL63 o
mol_id molecule chains
47 ICT1 p
mol_id molecule chains
48 CRIF1 q
mol_id molecule chains
49 bS18a r
mol_id molecule chains
50 mS30 s
mol_id molecule chains
51 unknown protein t
Source :
mol_id organism_scientific organism_common
1 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
2 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
3 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
4 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
5 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
6 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
7 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
8 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
9 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
10 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
11 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
12 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
13 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
14 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
15 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
16 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
17 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
18 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
19 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
20 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
21 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
22 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
23 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
24 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
25 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
26 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
27 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
28 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
29 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
30 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
31 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
32 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
33 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
34 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
35 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
36 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
37 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
38 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
39 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
40 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
41 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
42 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
43 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
44 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
45 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
46 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
47 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
48 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
49 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
50 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
mol_id organism_scientific organism_common
51 Homo sapiens  (taxid:9606) Human
cell_line: HEK293
Authors : Brown, A., Amunts, A., Bai, X.C., Sugimoto, Y., Edwards, P.C., Murshudov, G., Scheres, S.H.W., Ramakrishnan, V.
Keywords : mitochondria, large subunit, rRNA, tRNA, RIBOSOME
Exp. method : ELECTRON MICROSCOPY ( 3.4 Å )
Citation :

Structure of the large ribosomal subunit from human mitochondria.

Brown, A.,Amunts, A.,Bai, X.C.  et al.
(2014)  Science  346 : 718 - 722

PubMed: 25278503
DOI: 10.1126/science.1258026

Reaction

Chain : D
UniProt : Q5T653 (RM02_HUMAN)
Reaction : -
Chain : E
UniProt : P09001 (RM03_HUMAN)
Reaction : -
Chain : F
UniProt : Q9BYD3 (RM04_HUMAN)
Reaction : -
Chain : H
UniProt : Q9BYD2 (RM09_HUMAN)
Reaction : -
Chain : I
UniProt : Q7Z7H8 (RM10_HUMAN)
Reaction : -
Chain : J
UniProt : Q9Y3B7 (RM11_HUMAN)
Reaction : -
Chain : K
UniProt : Q9BYD1 (RM13_HUMAN)
Reaction : -
Chain : L
UniProt : Q6P1L8 (RM14_HUMAN)
Reaction : -
Chain : M
UniProt : Q9P015 (RM15_HUMAN)
Reaction : -
Chain : N
UniProt : Q9NX20 (RM16_HUMAN)
Reaction : -
Chain : O
UniProt : Q9NRX2 (RM17_HUMAN)
Reaction : -
Chain : P
UniProt : A8K9D2 (A8K9D2_HUMAN)
Reaction : -
Chain : Q
UniProt : P49406 (RM19_HUMAN)
Reaction : -
Chain : R
UniProt : Q9BYC9 (RM20_HUMAN)
Reaction : -
Chain : S
UniProt : Q7Z2W9 (RM21_HUMAN)
Reaction : -
Chain : T
UniProt : E7ESL0 (E7ESL0_HUMAN)
Reaction : -
Chain : U
UniProt : Q16540 (RM23_HUMAN)
Reaction : -
Chain : V
UniProt : Q96A35 (RM24_HUMAN)
Reaction : -
Chain : W
UniProt : Q9P0M9 (RM27_HUMAN)
Reaction : -
Chain : X
UniProt : Q4TT38
Reaction : -
Chain : Y
UniProt : Q9HD33 (RM47_HUMAN)
Reaction : -
Chain : Z
UniProt : Q8TCC3 (RM30_HUMAN)
Reaction : -
Chain : 0
UniProt : Q9BYC8 (RM32_HUMAN)
Reaction : -
Chain : 1
UniProt : O75394 (RM33_HUMAN)
Reaction : -
Chain : 2
UniProt : Q9BQ48 (RM34_HUMAN)
Reaction : -
Chain : 3
UniProt : Q9NZE8 (RM35_HUMAN)
Reaction : -
Chain : 4
UniProt : Q9P0J6 (RM36_HUMAN)
Reaction : -
Chain : 5
UniProt : Q9BZE1 (RM37_HUMAN)
Reaction : -
Chain : 6
UniProt : Q96DV4 (RM38_HUMAN)
Reaction : -
Chain : 7
UniProt : Q9NYK5 (RM39_HUMAN)
Reaction : -
Chain : 8
UniProt : Q9NQ50 (RM40_HUMAN)
Reaction : -
Chain : 9
UniProt : Q8IXM3 (RM41_HUMAN)
Reaction : -
Chain : a
UniProt : Q9Y6G3 (RM42_HUMAN)
Reaction : -
Chain : b
UniProt : Q8N983 (RM43_HUMAN)
Reaction : -
Chain : c
UniProt : Q9H9J2 (RM44_HUMAN)
Reaction : -
Chain : d
UniProt : Q9BRJ2 (RM45_HUMAN)
Reaction : -
Chain : e
UniProt : Q9H2W6 (RM46_HUMAN)
Reaction : -
Chain : f
UniProt : Q96GC5 (RM48_HUMAN)
Reaction : -
Chain : g
UniProt : Q13405 (RM49_HUMAN)
Reaction : -
Chain : h
UniProt : Q8N5N7 (RM50_HUMAN)
Reaction : -
Chain : i
UniProt : Q4U2R6 (RM51_HUMAN)
Reaction : -
Chain : j
UniProt : A8K7J6 (A8K7J6_HUMAN)
Reaction : -
Chain : k
UniProt : Q96EL3 (RM53_HUMAN)
Reaction : -
Chain : o
UniProt : Q9BQC6 (RT63_HUMAN)
Reaction : -
Chain : p
UniProt : Q14197 (ICT1_HUMAN)
Reaction: EC: Evidence:
Physiological Direction:
an N-acyl-L-alpha-aminoacyl-tRNA + H2O = a tRNA + an N-acyl-L- amino acid + H(+) 3.1.1.29 PubMed:20186120
left-to-right
Chain : q
UniProt : Q8TAE8 (G45IP_HUMAN)
Reaction : -
Chain : r
UniProt : Q9NVS2 (RT18A_HUMAN)
Reaction : -
Chain : s
UniProt : Q9NP92 (RT30_HUMAN)
Reaction : -