Brand  (β version)

color scheme of protein:

hetatm:

x
information
centroid:
interaction residue:

chain: Hide other chain(s)

Ligands
Code Name Link
C6Q N-{(1s,2s,3r)-1-[(alpha-D-galactopyranosyloxy)methyl]-2,3-dihydroxyheptadecyl}-6-phenylhexanamide
EDO 1,2-ethanediol
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose
PLM Palmitic acid
Modified Residues
Code Name Link
BMA Beta-D-mannopyranose
FUC Alpha-L-fucopyranose
MAN Alpha-D-mannopyranose
Code : 3GML
Header : IMMUNE SYSTEM
Title : Structure of mouse CD1d in complex with C6Ph
Release Data : 2009-11-10
Compound :
mol_id molecule chains
1 T-cell surface glycoprotein CD1d1 A
fragment: UNP residues 19-297
mol_id molecule chains
2 Beta-2 microglobulin B
fragment: UNP residues 21-119
Source :
mol_id organism_scientific organism_common expression_system
1 Mus musculus  (taxid:10090) Mouse Spodoptera frugiperda  (taxid:7108)
gene: Cd1d1, Cd1.1
expression_system_strain: SF9
expression_system_vector_type: Baculovirus
expression_system_plasmid: pAcUW51
mol_id organism_scientific organism_common expression_system
2 Mus musculus  (taxid:10090) Mouse Spodoptera frugiperda  (taxid:7108)
gene: B2m
expression_system_strain: SF9
expression_system_vector_type: Baculovirus
expression_system_plasmid: pAcUW51
Authors : Schiefner, A., Wilson, I.A.
Keywords : CD1, NKT cell, glycolipid, antigen presentation, Cell membrane, Disulfide bond, Endosome, Glycoprotein, Immune response, Immunoglobulin domain, Innate immunity, Lysosome, Membrane, Transmembrane, MHC I, Secreted, Immune System
Exp. method : X-RAY DIFFRACTION ( 1.70 Å )
Citation :

Structural evaluation of potent NKT cell agonists: implications for design of novel stimulatory ligands.

Schiefner, A.,Fujio, M.,Wu, D.  et al.
(2009)  J.Mol.Biol.  394 : 71 - 82

PubMed: 19732779
DOI: 10.1016/j.jmb.2009.08.061

Chain : A
UniProt : P11609 (CD1D1_MOUSE)
Reaction : -
Chain : B
UniProt : Q91XJ8 (B2MG_MOUSE)
Reaction : -