Brand  (β version)

PDB ID: 3ESJ

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Ligands
Code Name Style Show Link
CC7 4-amino-1-[(2s,4ar,6r,7r,7as)-2,7-dihydroxy-2-oxidotetrahydro-4h-furo[3,2-D][1,3,2]dioxaphosphinin-6-yl]pyrimidin-2(1h)-one PoSSuM
GPP Geranyl diphosphate PoSSuM
MG Magnesium ion PoSSuM
ZN Zinc ion PoSSuM
Non-standard Residues
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Structure summary

Code : 3ESJ   PDBj   RCSB PDB   PDBe
Header : LYASE
Title : Crystal structure of 2C-methyl-D-erythritol 2,4-clycodiphosphate synthase complexed with ligand
Release Data : 2009-08-25
Compound :
mol_id molecule chains synonym
1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase A MECPS, MECDP-synthase
ec: 4.6.1.12
Source :
mol_id organism_scientific expression_system
1 Escherichia coli K-12  (taxid:83333) Escherichia coli BL21(DE3)  (taxid:469008)
strain: K12
gene: ispF
expression_system_strain: BL21(DE3)
expression_system_vector_type: plasmid
expression_system_plasmid: pET15b
Authors : Hunter, W.N., Ramsden, N.L.
Keywords : MECDP-synthase, Isoprene biosynthesis, Lyase, Magnesium, Manganese, Metal-binding
Exp. method : X-RAY DIFFRACTION ( 2.700 Å )
Citation :

A structure-based approach to ligand discovery for 2C-methyl-D-erythritol-2,4-cyclodiphosphate synthase: a target for antimicrobial therapy

Ramsden, N.L.,Buetow, L.,Dawson, A.  et al.
(2009)  J.Med.Chem.  52 : 2531 - 2542

PubMed: 19320487
DOI: 10.1021/jm801475n

Reaction

Chain : A
UniProt : P62617 (ISPF_ECOLI)
Reaction: EC: Evidence:
Physiological Direction:
4-CDP-2-C-methyl-D-erythritol 2-phosphate = 2-C-methyl-D- erythritol 2,4-cyclic diphosphate + CMP 4.6.1.12 HAMAP-Rule:MF_00107, PubMed:10694574, PubMed:22839733
-
4-CDP-2-C-methyl-D-erythritol = 2-C-methyl-D-erythritol 3,4- cyclophosphate + CMP + H(+) - PubMed:10694574
-
Cofactor: Evidence: Note:
a divalent metal cation ECO:0000255 | HAMAP-Rule:MF_00107
ECO:0000269 | PubMed:10694574
ECO:0000269 | PubMed:11786530
ECO:0000269 | PubMed:11829504
ECO:0000269 | PubMed:11997478
ECO:0000269 | PubMed:15608374
ECO:0000269 | PubMed:16392111
ECO:0000269 | PubMed:16511114
ECO:0000269 | PubMed:19320487
Binds 1 divalent metal cation per subunit.