Brand  (β version)

PDB ID: 3D38

Hetero Atom Contents

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Ligands
Code Name Style Show Link
BCB Bacteriochlorophyll B PoSSuM
BPB Bacteriopheophytin B PoSSuM
FE2 Fe (II) ion PoSSuM
HEC Heme C PoSSuM
HTO Heptane-1,2,3-triol PoSSuM
LDA Lauryl dimethylamine-N-oxide PoSSuM
MQ9 Menaquinone-9 PoSSuM
NS5 15-cis-1,2-dihydroneurosporene PoSSuM
SO4 Sulfate ion PoSSuM
UQ1 Ubiquinone-1 PoSSuM
Non-standard Residues
Code Name Show
FME N-formylmethionine
Glycosylation
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Modification
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Structure summary

Code : 3D38   PDBj   RCSB PDB   PDBe
Header : PHOTOSYNTHESIS
Title : Crystal structure of new trigonal form of photosynthetic reaction center from Blastochloris viridis. Crystals grown in microfluidics by detergent capture.
Release Data : 2008-07-08
Compound :
mol_id molecule chains synonym
1 Photosynthetic reaction center cytochrome c subunit C Cytochrome c558/c559
mol_id molecule chains synonym
2 Reaction center protein H chain H Photosynthetic reaction center H subunit
mol_id molecule chains synonym
3 Reaction center protein L chain L Photosynthetic reaction center L subunit
mol_id molecule chains synonym
4 Reaction center protein M chain M Photosynthetic reaction center M subunit
Source :
mol_id organism_scientific
1 Blastochloris viridis  (taxid:1079)
atcc: 19567
mol_id organism_scientific
2 Blastochloris viridis  (taxid:1079)
atcc: 19567
mol_id organism_scientific
3 Blastochloris viridis  (taxid:1079)
atcc: 19567
mol_id organism_scientific
4 Blastochloris viridis  (taxid:1079)
atcc: 19567
Authors : Li, L., Nachtergaele, S.H.M., Seddon, A.M., Tereshko, V., Ponomarenko, N., Ismagilov, R.F., Accelerated Technologies Center for Gene to 3D Structure (ATCG3D)
Keywords : detergent extraction, reaction center, microfludics, plugs, Structural Genomics, PSI-2, Protein Structure Initiative, Accelerated Technologies Center for Gene to 3D Structure, ATCG3D, Electron transport, Heme, Iron, Lipoprotein, Membrane, Metal-binding, Photosynthesis, Transport, Bacteriochlorophyll, Chlorophyll, Chromophore, Formylation, Transmembrane, Magnesium
Exp. method : X-RAY DIFFRACTION ( 3.210 Å )
Citation :

Simple host-guest chemistry to modulate the process of concentration and crystallization of membrane proteins by detergent capture in a microfluidic device.

Li, L.,Nachtergaele, S.,Seddon, A.M.  et al.
(2008)  J.Am.Chem.Soc.  130 : 14324 - 14328

PubMed: 18831551
DOI: 10.1021/ja805361j

Reaction

Chain : C
UniProt : P07173 (CYCR_BLAVI)
Reaction : -
Chain : H
UniProt : P06008 (RCEH_BLAVI)
Reaction : -
Chain : L
UniProt : P06009 (RCEL_BLAVI)
Reaction : -
Chain : M
UniProt : P06010 (RCEM_BLAVI)
Reaction : -