Het-PDB Navi2 (PDB: 3ARB)

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Ligands
Code	Name	Link
D12	Dodecane	PoSSuM
FEE	N-{(1s,2s,3r)-1-[(alpha-D-galactopyranosyloxy)methyl]-2,3-dihydroxyoctyl}tetracosanamide	PoSSuM
PEG	Di(hydroxyethyl)ether	PoSSuM

Non-standard Residues
Code	Name	Show

Glycosylation
Code	Name	Emphasize
NAG	2-acetamido-2-deoxy-beta-D-glucopyranose

Modification
Code	Name	Show

Download interaction data: 3ARB

Code :

3ARB PDBj RCSB PDB PDBe

Header :

IMMUNE SYSTEM

Title :

Ternary crystal structure of the NKT TCR-CD1d-alpha-galactosylceramide analogue-OCH

Release Data :

2011-03-30

Compound :

mol_id	molecule	chains
1	Antigen-presenting glycoprotein CD1d1	A
	fragment: heavy chain

mol_id	molecule	chains
2	Beta-2-microglobulin	B

mol_id	molecule	chains
3	NKT Valpha14-Jalpha18,NKT Valpha14-Jalpha18	C
	other_details: Chimera of mouse variable domain and human constant domain,Chimera of mouse variable domain and human constant domain

mol_id	molecule	chains
4	NKT Vbeta8.2,NKT Vbeta8.2	D
	other_details: Chimera of mouse variable domain and human constant domain,Chimera of mouse variable domain and human constant domain

Source :

mol_id	organism_scientific	organism_common	expression_system
1	Mus musculus (taxid:10090)	Mouse	Trichoplusia ni (taxid:7111)
	gene: Cd1d1, Cd1.1 expression_system_common: Cabbage looper expression_system_vector_type: Baculovirus expression_system_plasmid: pBacP10PH

mol_id	organism_scientific	organism_common	expression_system
2	Mus musculus (taxid:10090)	Mouse	Trichoplusia ni (taxid:7111)
	gene: B2m expression_system_common: Cabbage looper expression_system_vector_type: Baculovirus expression_system_plasmid: pBacP10PH

mol_id	organism_scientific	organism_common	expression_system
3	Homo sapiens (taxid:9606)	Human	Escherichia coli (taxid:562)
	expression_system_vector_type: Plasmid expression_system_plasmid: pET

mol_id	organism_scientific	organism_common	expression_system
4	Homo sapiens (taxid:9606)	Human	Escherichia coli (taxid:562)
	expression_system_vector_type: Plasmid expression_system_plasmid: pET

Authors :

Wun, K.S., Rossjohn, J.

Keywords :

mouse NKT TCR, mouse CD1d, IMMUNE SYSTEM

Exp. method :

X-RAY DIFFRACTION ( 2.70 Å )

Citation :

A molecular basis for the exquisite CD1d-restricted antigen specificity and functional responses of natural killer T cells

Wun, K.S.,Cameron, G.,Patel, O. et al.
(2011) Immunity 34 : 327 - 339

PDB ID: 3ARB