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Ligands
Code Name Style Show Link
FAJ Fad-trans-2-phenylcyclopropylamine adduct
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Glycosylation
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Code : 2Z5U   PDBj   RCSB PDB   PDBe
Header : OXIDOREDUCTASE
Title : Crystal structure of Lysine-specific histone demethylase 1
Release Data : 2008-04-01
Compound :
mol_id molecule chains synonym
1 Lysine-specific histone demethylase 1 A Flavin-containing amine oxidase domain-containing protein 2, BRAF35-HDAC complex protein BHC110
ec: 1.-.-.-
fragment: LSD1, residues 172-833
Source :
mol_id organism_scientific organism_common expression_system
1 Homo sapiens  (taxid:9606) Human Escherichia coli BL21  (taxid:511693)
gene: KIAA0601, LSD1
expression_system_strain: BL21
expression_system_vector_type: plasmid
expression_system_plasmid: pGEX-HS-6P
Authors : Mimasu, S., Sengoku, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Keywords : chromatin, histone demethylase, nucleosome, transcription, LSD1, Lysine-specific, Chromatin regulator, FAD, Nucleus, Oxidoreductase, Phosphorylation, Repressor, Transcription regulation, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI
Exp. method : X-RAY DIFFRACTION ( 2.25 Å )
Citation :

Crystal structure of histone demethylase LSD1 and tranylcypromine at 2.25 A

Mimasu, S.,Sengoku, T.,Fukuzawa, S.  et al.
(2008)  Biochem.Biophys.Res.Commun.  366 : 15 - 22

PubMed: 18039463
DOI: 10.1016/j.bbrc.2007.11.066

Chain : A
UniProt : O60341 (KDM1A_HUMAN)
Reaction: EC: Evidence:
Physiological Direction:
2 A + 2 H2O + N(6),N(6)-dimethyl-L-lysyl(4)-[histone H3] = 2 AH2 + 2 formaldehyde + L-lysyl(4)-[histone H3] 1.14.99.66 PubMed:15620353, PubMed:15811342
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