Brand  (β version)

PDB ID: 2WPN

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Ligands
Code Name Style Show Link
CL Chloride ion PoSSuM
FCO Carbonmonoxide-(dicyano) iron PoSSuM
FE2 Fe (II) ion PoSSuM
FSX Bis-(mu-2-oxo),[(mu-3--sulfido)-bis(mu-2--sulfido)-tris(cys-S)-tri-iron] (aqua)(glu-O)iron(II) PoSSuM
NI Nickel (II) ion PoSSuM
SBY 3-[dodecyl(dimethyl)ammonio]propane-1-sulfonate PoSSuM
SF4 Iron/sulfur cluster PoSSuM
Non-standard Residues
Code Name Show
OCS Cysteinesulfonic acid
PSW 3-(sulfanylselanyl)-L-alanine
Glycosylation
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Modification
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Structure summary

Code : 2WPN   PDBj   RCSB PDB   PDBe
Header : OXIDOREDUCTASE
Title : Structure of the oxidised, as-isolated NiFeSe hydrogenase from D. vulgaris Hildenborough
Release Data : 2010-01-12
Compound :
mol_id molecule chains synonym
1 PERIPLASMIC [NIFESE] HYDROGENASE, SMALL SUBUNIT A NIFESE HYDROGENASE
ec: 1.18.99.1
mol_id molecule chains synonym
2 PERIPLASMIC [NIFESE] HYDROGENASE, LARGE SUBUNIT, SELENOCYSTEINE-CONTAINING B NIFESE HYDROGENASE
ec: 1.18.99.1
fragment: RESIDUES 1-495
Source :
mol_id organism_scientific
1 DESULFOVIBRIO VULGARIS  (taxid:882)
strain: HILDENBOROUGH
atcc: 29579
mol_id organism_scientific
2 DESULFOVIBRIO VULGARIS  (taxid:882)
strain: HILDENBOROUGH
atcc: 29579
Authors : Marques, M.C., Coelho, R., De Lacey, A.L., Pereira, I.A.C., Matias, P.M.
Keywords : HYDROGENASE, METAL-BINDING, OXIDOREDUCTASE, OXYGEN TOLERANCE
Exp. method : X-RAY DIFFRACTION ( 2.04 Å )
Citation :

The three-dimensional structure of [NiFeSe] hydrogenase from Desulfovibrio vulgaris Hildenborough: a hydrogenase without a bridging ligand in the active site in its oxidised, "as-isolated" state.

Marques, M.C.,Coelho, R.,De Lacey, A.L.  et al.
(2010)  J.Mol.Biol.  396 : 893 - 907

PubMed: 20026074
DOI: 10.1016/j.jmb.2009.12.013

Purification, Crystallization and Preliminary Crystallographic Analysis of the [Nifese] Hydrogenase from Desulfovibrio Vulgaris Hildenborough.

Marques, M.,Coelho, R.,Pereira, I.A.  et al.
(2009)  Acta Crystallogr.,Sect.F  65 : 920

PubMed: 19724133
DOI: 10.1107/S1744309109031261

Reaction

Chain : A
UniProt : Q72AS4 (Q72AS4_DESVH)
Reaction: EC: Evidence:
Physiological Direction:
2 Fe(III)-[cytochrome c3] + H2 = 2 Fe(II)-[cytochrome c3] + 2 H(+) 1.12.2.1 ARBA:ARBA00029307
-
Chain : B
UniProt : Q72AS3 (Q72AS3_DESVH)
Reaction : -