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Ligands
Code Name Style Show Link
CA Calcium ion
Non-standard Residues
Code Name Show
C34 N4-methyl-2'-deoxy-cytidine-5'-monophosphate
Glycosylation
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Modification
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Code : 2OKS   PDBj   RCSB PDB   PDBe
Header : DNA
Title : X-ray Structure of a DNA Repair Substrate Containing an Alkyl Interstrand Crosslink at 1.65 Resolution
Release Data : 2007-02-13
Compound :
mol_id molecule chains
1 5'-D(*CP*CP*AP*AP*(C34)P*GP*TP*TP*GP*G)-3' A
other_details: N4C-ethyl-N4C crosslinked DNA
Source :
mol_id organism_scientific
1
synthetic: yes
other_details: solid phase synthesis of DNA oligo, crosslink phosphoramidite synthesized separately
Authors : Swenson, M.C., Paranawithana, S.R., Miller, P.S., Kielkopf, C.L.
Keywords : INTERSTRAND CROSSLINK, DNA, DNA DAMAGE
Exp. method : X-RAY DIFFRACTION ( 1.65 Å )
Citation :

Structure of a DNA repair substrate containing an alkyl interstrand cross-link at 1.65 a resolution.

Swenson, M.C.,Paranawithana, S.R.,Miller, P.S.  et al.
(2007)  Biochemistry  46 : 4545 - 4553

PubMed: 17375936
DOI: 10.1021/bi700109r