Brand  (β version)

PDB ID: 2KP3

Hetero Atom Contents

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Ligands
Code Name Style Show Link
Non-standard Residues
Code Name Show
A5O Adenine arabinose-5'-phosphate
CAR Cytosine arabinose-5'-phosphate
GAO Guanine arabinose-5'-phosphate
UAR Uracil arabinose-5'-phosphate
Glycosylation
Code Name Emphasize
Modification
Code Name Show

Structure summary

Code : 2KP3   PDBj   RCSB PDB   PDBe
Header : RNA
Title : Structure of ANA-RNA hybrid duplex
Release Data : 2010-02-09
Compound :
mol_id molecule chains
1 RNA (5'-R(*(GAO)P*(CAR)P*(UAR)P*(A5O)P*(UAR)P*(A5O)P*(A5O)P*(UAR)P*(GAO)P*(GAO))-3') A
mol_id molecule chains
2 RNA (5'-R(*CP*CP*AP*UP*UP*AP*UP*AP*GP*C)-3') B
Source :
mol_id organism_scientific
1
synthetic: yes
mol_id organism_scientific
2
synthetic: yes
Authors : Gonzalez, C., Martn-Pintado, N., Watts, J., Gomez-Pinto, I., Dhama, M., Orozco, M., Schwartzentruber, J., Portella, G.
Keywords : ANA, arabinonucleic acid, nucleic acid structure, NMR/MD/TI, hybrid duplex, RNA
Exp. method : SOLUTION NMR
Citation :

Differential stability of 2'F-ANA*RNA and ANA*RNA hybrid duplexes: roles of structure, pseudohydrogen bonding, hydration, ion uptake and flexibility.

Watts, J.K.,Martin-Pintado, N.,Gomez-Pinto, I.  et al.
(2010)  Nucleic Acids Res.  38 : 2498 - 2511

PubMed: 20071751
DOI: 10.1093/nar/gkp1225