Brand  (β version)

PDB ID: 2JI8

Hetero Atom Contents

  The number of atoms exceeds 100,000.
  So, it can not be displayed here.

Select unit:

Select hetatm:   

close
information
centroid:
interaction residue:

Select chain:   Sequence  

Data format:   

Color scheme of protein:

Ligands
Code Name Style Show Link
ADP Adenosine-5'-diphosphate PoSSuM
FYN S-{(9r,13s,15r)-17-[(2r,3s,4r,5r)-5-(6-amino-9h-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-9,13,15-trihydroxy-10,10-dimethyl-13,15-dioxido-4,8-dioxo-12,14,16-trioxa-3,7-diaza-13,15-diphosphaheptadec-1-yl} thioformate PoSSuM
MG Magnesium ion PoSSuM
PGE Triethylene glycol PoSSuM
TPP Thiamine diphosphate PoSSuM
Non-standard Residues
Code Name Show
Glycosylation
Code Name Emphasize
Modification
Code Name Show

Structure summary

Code : 2JI8   PDBj   RCSB PDB   PDBe
Header : LYASE
Title : X-ray structure of Oxalyl-CoA decarboxylase in complex with Formyl- CoA
Release Data : 2007-07-17
Compound :
mol_id molecule chains synonym
1 OXALYL-COA DECARBOXYLASE A,B OXALYL-COENZYMEA DECARBOXYLASE
ec: 4.1.1.8
Source :
mol_id organism_scientific expression_system
1 OXALOBACTER FORMIGENES  (taxid:847) ESCHERICHIA COLI  (taxid:469008)
expression_system_strain: BL21(DE3)
expression_system_plasmid: PET9A
Authors : Berthold, C.L., Toyota, C.G., Moussatche, P., Wood, M.D., Leeper, F., Richards, N.G.J., Lindqvist, Y.
Keywords : OXALATE DEGRADATION, THIAMINE PYROPHOSPHATE, NON- OXIDATIVE DECARBOXYLASE, LYASE, FLAVOPROTEIN, DECARBOXYLASE, PRODUCT COMPLEX, THIAMIN DIPHOSPHATE-DEPENDENT
Exp. method : X-RAY DIFFRACTION ( 2.15 Å )
Citation :

Crystallographic Snapshots of Oxalyl-Coa Decarboxylase Give Insights Into Catalysis by Nonoxidative Thdp-Dependent Decarboxylases

Berthold, C.L.,Toyota, C.G.,Moussatche, P.  et al.
(2007)  Structure  15 : 853

PubMed: 17637344
DOI: 10.1016/J.STR.2007.06.001

Reaction

Chain : A, B
UniProt : P40149 (OXC_OXAFO)
Reaction: EC: Evidence:
Physiological Direction:
H(+) + oxalyl-CoA = CO2 + formyl-CoA 4.1.1.8 PubMed:16216870, PubMed:17637344
-