Code : |
2JA5
PDBj
RCSB PDB
PDBe
|
Title : |
CPD lesion containing RNA Polymerase II elongation complex A |
Release Data : |
2007-02-20 |
Compound : |
mol_id |
molecule |
chains |
synonym
|
1 |
DNA-directed RNA polymerase II subunit RPB1
|
A
|
RNA polymerase II subunit B1,DNA-directed RNA polymerase III largest subunit,RNA polymerase II subunit B220
|
|
ec: 2.7.7.6
|
mol_id |
molecule |
chains |
synonym
|
2 |
DNA-directed RNA polymerase II subunit RPB2
|
B
|
RNA polymerase II subunit 2,B150,DNA-directed RNA polymerase II 140 kDa polypeptide
|
|
ec: 2.7.7.6
|
mol_id |
molecule |
chains |
synonym
|
3 |
DNA-directed RNA polymerase II subunit RPB3
|
C
|
RNA polymerase II subunit B3,B44.5,DNA-directed RNA polymerase II 45 kDa polypeptide
|
mol_id |
molecule |
chains |
synonym
|
4 |
DNA-directed RNA polymerase II subunit RPB4
|
D
|
RNA polymerase II subunit B4,B32,DNA-directed RNA polymerase II 32 kDa polypeptide
|
mol_id |
molecule |
chains |
synonym
|
5 |
DNA-directed RNA polymerases I, II, and III subunit RPABC1
|
E
|
RNA polymerases I,II,and III subunit ABC1,ABC27,DNA-directed RNA polymerases I,and III 27 kDa polypeptide
|
mol_id |
molecule |
chains |
synonym
|
6 |
DNA-directed RNA polymerases I, II, and III subunit RPABC2
|
F
|
RNA polymerases I,II,and III subunit ABC2,ABC23,DNA-directed RNA polymerases I,and III 23 kDa polypeptide
|
mol_id |
molecule |
chains |
synonym
|
7 |
DNA-directed RNA polymerase II subunit RPB7
|
G
|
RNA polymerase II subunit B7,B16
|
mol_id |
molecule |
chains |
synonym
|
8 |
DNA-directed RNA polymerases I, II, and III subunit RPABC3
|
H
|
RNA polymerases I,II,and III subunit ABC3,ABC14.4,ABC14.5,DNA-directed RNA polymerases I,and III 14.5 kDa polypeptide
|
mol_id |
molecule |
chains |
synonym
|
9 |
DNA-directed RNA polymerase II subunit RPB9
|
I
|
RNA polymerase II subunit B9,B12.6,DNA-directed RNA polymerase II 14.2 kDa polypeptide,DNA-directed RNA polymerase II subunit 9
|
mol_id |
molecule |
chains |
synonym
|
10 |
DNA-directed RNA polymerases I, II, and III subunit RPABC5
|
J
|
RNA polymerases I,II,and III subunit ABC5,ABC10-beta,ABC8,DNA-directed RNA polymerases I,and III 8.3 kDa polypeptide
|
mol_id |
molecule |
chains |
synonym
|
11 |
DNA-directed RNA polymerase II subunit RPB11
|
K
|
RNA polymerase II subunit B11,B13.6,DNA-directed RNA polymerase II 13.6 kDa polypeptide
|
mol_id |
molecule |
chains |
synonym
|
12 |
DNA-directed RNA polymerases I, II, and III subunit RPABC4
|
L
|
RNA polymerases I,II,and III subunit ABC4,ABC10-alpha
|
mol_id |
molecule |
chains |
synonym
|
13 |
5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3'
|
P
|
PRODUCT RNA OF COMPLEX A
|
mol_id |
molecule |
chains |
synonym
|
14 |
5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP *CP*TP*TTP*TP*TP*CP*CP*BRUP*GP*GP*TP*CP*AP*TP*T)-3'
|
T
|
THYMINE-THYMINE CPD CONTAINING TEMPLATE DNA OF COMPLEX A
|
|
Source : |
mol_id |
organism_scientific |
organism_common
|
|
1 |
Saccharomyces cerevisiae
(taxid:4932)
|
Baker's yeast
|
|
|
strain: ATCC 204508 / S288c
|
mol_id |
organism_scientific |
organism_common
|
|
2 |
Saccharomyces cerevisiae
(taxid:4932)
|
Baker's yeast
|
|
|
strain: ATCC 204508 / S288c
|
mol_id |
organism_scientific |
organism_common
|
|
3 |
Saccharomyces cerevisiae
(taxid:4932)
|
Baker's yeast
|
|
|
strain: ATCC 204508 / S288c
|
mol_id |
organism_scientific |
organism_common
|
|
4 |
Saccharomyces cerevisiae
(taxid:4932)
|
Baker's yeast
|
|
|
strain: ATCC 204508 / S288c
|
mol_id |
organism_scientific |
organism_common
|
|
5 |
Saccharomyces cerevisiae
(taxid:4932)
|
Baker's yeast
|
|
|
strain: ATCC 204508 / S288c
|
mol_id |
organism_scientific |
organism_common
|
|
6 |
Saccharomyces cerevisiae
(taxid:4932)
|
Baker's yeast
|
|
|
strain: ATCC 204508 / S288c
|
mol_id |
organism_scientific |
organism_common
|
|
7 |
Saccharomyces cerevisiae
(taxid:4932)
|
Baker's yeast
|
|
|
strain: ATCC 204508 / S288c
|
mol_id |
organism_scientific |
organism_common
|
|
8 |
Saccharomyces cerevisiae
(taxid:4932)
|
Baker's yeast
|
|
mol_id |
organism_scientific |
organism_common
|
|
9 |
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
(taxid:559292)
|
Baker's yeast
|
|
|
strain: ATCC 204508 / S288c
|
mol_id |
organism_scientific |
organism_common
|
|
10 |
Saccharomyces cerevisiae
(taxid:4932)
|
Baker's yeast
|
|
mol_id |
organism_scientific |
organism_common
|
|
11 |
Saccharomyces cerevisiae
(taxid:4932)
|
Baker's yeast
|
|
mol_id |
organism_scientific |
organism_common
|
|
12 |
Saccharomyces cerevisiae
(taxid:4932)
|
Baker's yeast
|
|
mol_id |
organism_scientific |
|
|
13 |
SYNTHETIC CONSTRUCT
(taxid:32630)
|
|
|
|
synthetic: yes
other_details: SYNTHETIC OLIGONUCLEOTIDE
|
mol_id |
organism_scientific |
|
|
14 |
SYNTHETIC CONSTRUCT
(taxid:32630)
|
|
|
|
synthetic: yes
other_details: SYNTHETIC OLIGONUCLEOTIDE
|
|
Authors : |
Brueckner, F., Hennecke, U., Carell, T., Cramer, P. |
Keywords : |
DNA-DIRECTED RNA POLYMERASE, LESION RECOGNITION, TRANSFERASE/DNA/RNA, DNA DAMAGE, ZINC-FINGER, DNA-BINDING, PHOTOLESION, PHOSPHORYLATION, MISINCORPORATION, RNA POLYMERASE II, TRANSCRIPTION- COUPLED REPAIR, CYCLOBUTANE PYRIMIDINE DIMER, TCR, CPD, ZINC, ARREST, STALLING, DNA LESION, METAL-BINDING, NUCLEAR PROTEIN, TRANSCRIPTION BUBBLE, NUCLEOTIDYLTRANSFERASE, DAMAGE RECOGNITION, ELONGATION COMPLEX, TRANSFERASE, THYMINE DIMER, TRANSCRIPTION |
Exp. method : |
X-RAY DIFFRACTION ( 3.8 Å ) |
Citation : |
Cpd Damage Recognition by Transcribing RNA Polymerase II
Brueckner, F.,Hennecke, U.,Carell, T.
et al.
(2007)
Science
315
: 859
PubMed: 17290000
DOI: 10.1126/SCIENCE.1135400
|