Brand  (β version)

PDB ID: 2DPC

Hetero Atom Contents

  The number of atoms exceeds 100,000.
  So, it can not be displayed here.

Select unit:

Select hetatm:   

close
information
centroid:
interaction residue:

Select chain:   Sequence  

Data format:   

Color scheme of protein:

Ligands
Code Name Style Show Link
CMY (6-aminohexyl)carbamic acid PoSSuM
CO Cobalt (II) ion PoSSuM
MG Magnesium ion PoSSuM
Non-standard Residues
Code Name Show
OMU O2'-methyluridine 5'-monophosphate
Glycosylation
Code Name Emphasize
Modification
Code Name Show

Structure summary

Code : 2DPC   PDBj   RCSB PDB   PDBe
Header : DNA
Title : Crystal Structure of D(CGCGAATXCGCG) Where X is 5-(N-aminohexyl)carbamoyl-2'-O-methyluridine
Release Data : 2007-04-17
Compound :
mol_id molecule chains
1 DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*(OMU)P*DCP*DGP*DCP*DG)-3') A,B
Source :
mol_id organism_scientific
1
synthetic: yes
other_details: This DNA dodecamer is a synthetic construct.
Authors : Juan, E.C.M., Kondo, J., Kurihara, T., Ito, T., Ueno, Y., Matsuda, A., Takenaka, A.
Keywords : modified nucleotide, 5-(N-aminohexyl)carbamoyl-2'-O-methyluridine, B-DNA, DNA
Exp. method : X-RAY DIFFRACTION ( 1.55 Å )
Citation :

Crystal structures of DNA:DNA and DNA:RNA duplexes containing 5-(N-aminohexyl)carbamoyl-modified uracils reveal the basis for properties as antigene and antisense molecules

Juan, E.C.M.,Kondo, J.,Kurihara, T.  et al.
(2007)  Nucleic Acids Res.  35 : 1969 - 1977

PubMed: 17341465
DOI: 10.1093/nar/gkl821