Brand  (β version)

PDB ID: 2A3L

Hetero Atom Contents

  The number of atoms exceeds 100,000.
  So, it can not be displayed here.

Select unit:

Select hetatm:   

close
information
centroid:
interaction residue:

Select chain:   Sequence  

Data format:   

Color scheme of protein:

Ligands
Code Name Style Show Link
ZN Zinc ion PoSSuM
PO4 Phosphate ion PoSSuM
CF5 Coformycin 5'-phosphate PoSSuM
Non-standard Residues
Code Name Show
Glycosylation
Code Name Emphasize
Modification
Code Name Show

Structure summary

Code : 2A3L   PDBj   RCSB PDB   PDBe
Header : HYDROLASE
Title : X-Ray Structure of Adenosine 5'-Monophosphate Deaminase from Arabidopsis Thaliana in Complex with Coformycin 5'-Phosphate
Release Data : 2005-07-19
Compound :
mol_id molecule chains synonym
1 AMP deaminase A AMPD
Source :
mol_id organism_scientific organism_common expression_system
1 Arabidopsis thaliana  (taxid:3702) Thale cress Spodoptera frugiperda  (taxid:7108)
gene: At2g38280
expression_system_common: Fall armyworm
expression_system_cell_line: SF9
expression_system_vector_type: VIRUS
expression_system_vector: BACULOVIRUS
expression_system_plasmid: P2BAC
Authors : Han, B.W., Wesenberg, G.E., Phillips Jr., G.N., Bitto, E., Bingman, C.A., Allard, S.T.M., Center for Eukaryotic Structural Genomics (CESG)
Keywords : ATAMPD, At2g38280, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, coformycin 5'-phosphate, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI, CESG, Center for Eukaryotic Structural Genomics, HYDROLASE
Exp. method : X-RAY DIFFRACTION ( 3.34 Å )
Citation :

Membrane association, mechanism of action, and structure of Arabidopsis embryonic factor 1 (FAC1).

Han, B.W.,Bingman, C.A.,Mahnke, D.K.  et al.
(2006)  J.Biol.Chem.  281 : 14939 - 14947

PubMed: 16543243
DOI: 10.1074/jbc.M513009200

Crystallization and preliminary X-ray crystallographic analysis of adenosine 5'-monophosphate deaminase (AMPD) from Arabidopsis thaliana in complex with coformycin 5'-phosphate

Han, B.W.,Bingham, C.A.,Mahnke, D.K.  et al.
(2005)  Acta Crystallogr.,Sect.F  61 : 740 - 742

PubMed: 16511144

Reaction

Chain : A
UniProt : O80452 (AMPD_ARATH)
Reaction: EC: Evidence:
Physiological Direction:
AMP + H2O + H(+) = IMP + NH4(+) 3.5.4.6 PubMed:16543243
-
Cofactor: Evidence: Note:
Zn(2+) ECO:0000269 | PubMed:16543243
Binds 1 zinc ion per subunit.