Het-PDB Navi2 (PDB: 1M5K)

The number of atoms exceeds 100,000.
So, it can not be displayed here.

Select unit:

Select hetatm:

information

centroid:

interaction residue:

Select chain: Sequence Hide other chain(s)

Data format:

Color scheme of protein:

Ligands
Code	Name		Style	Show	Link
CA	Calcium ion				PoSSuM
CL	Chloride ion				PoSSuM

Non-standard Residues
Code	Name	Show
A2M	2'-O-methyladenosine 5'-(dihydrogen phosphate)
IU	5-iodouridine-5'-monophosphate
GTP	Guanosine-5'-triphosphate

Glycosylation
Code	Name	Emphasize

Modification
Code	Name	Show

Download interaction data: 1M5K

Code :

1M5K PDBj RCSB PDB PDBe

Header :

TRANSLATION/RNA

Title :

Crystal structure of a hairpin ribozyme in the catalytically-active conformation

Release Data :

2002-08-02

Compound :

mol_id	molecule	chains
1	RNA INHIBITOR SUBSTRATE	A,D

mol_id	molecule	chains
2	RNA HAIRPIN RIBOZYME	B,E

mol_id	molecule	chains	synonym
3	PROTEIN (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A)	C,F	U1 snRNP A protein; U1 snRNP-specific protein A
	fragment: U1A RNA BINDING DOMAIN mutation: Y31H,Q36R

Source :

mol_id	organism_scientific
1
	synthetic: yes other_details: THIS SEQUENCE OCCURS NATURALLY IN SATELLITE TOBACCO RINGSPOT VIRUS

mol_id	organism_scientific
2
	synthetic: yes other_details: THIS SEQUENCE OCCURS NATURALLY IN SATELLITE TOBACCO RINGSPOT VIRUS

mol_id	organism_scientific	organism_common	expression_system
3	Homo sapiens (taxid:9606)	Human	Escherichia coli (taxid:562)
	gene: SNRPA expression_system_vector_type: PLASMID

Authors :

Rupert, P.B., Ferre-D'Amare, A.R.

Keywords :

HAIRPIN RIBOZYME, CATALYTIC RNA, U1A RNA BINDING PROTEIN DOCKED CONFORMATION, SUBSTRATE INHIBITOR STRAND, TRANSLATION-RNA COMPLEX

Exp. method :

X-RAY DIFFRACTION ( 2.40 Å )

Citation :

Transition state stabilization by a catalytic RNA

Rupert, P.B.,Massey, A.P.,Sigurdsson, S.T. et al.
(2002) Science 298 : 1421 - 1424

Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis

Rupert, P.B.,Ferre-D'Amare, A.R.
(2001) Nature 410 : 780 - 786

PDB ID: 1M5K