Brand  (β version)

PDB ID: 1LAQ

Hetero Atom Contents

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Ligands
Code Name Style Show Link
Non-standard Residues
Code Name Show
DNR 2'-deoxy-n3-protonated cytidine-5'-monophosphate
P 2'-deoxy-n1,n2-propano guanosine monophosphate
Glycosylation
Code Name Emphasize
Modification
Code Name Show

Structure summary

Code : 1LAQ   PDBj   RCSB PDB   PDBe
Header : DNA
Title : Solution Structure of the B-DNA Duplex CGCGGTXTCCGCG (X=PdG) Containing the 1,N2-propanodeoxyguanosine Adduct with the Deoxyribose at C20 Opposite PdG in the C2' Endo Conformation.
Release Data : 2002-04-17
Compound :
mol_id molecule chains
1 5'-D(*CP*GP*CP*GP*GP*TP*(P)P*TP*CP*CP*GP*CP*G)-3' A
mol_id molecule chains
2 5'-D(*CP*GP*CP*GP*GP*AP*(DNR)P*AP*CP*CP*GP*CP*G)-3' B
Source :
mol_id organism_scientific
1
synthetic: yes
other_details: This Synthetic DNA sequence was derived from the hisD3052 gene of salmonella typhimurium.
mol_id organism_scientific
2
synthetic: yes
other_details: This Synthetic DNA sequence was derived from the hisD3052 gene of salmonella typhimurium.
Authors : Weisenseel, J.P., Reddy, G.R., Marnett, L.J., Stone, M.P.
Keywords : DNA, B-type, propanodeoxyguanosine
Exp. method : SOLUTION NMR
Citation :

Structure of an oligodeoxynucleotide containing a 1,N(2)-propanodeoxyguanosine adduct positioned in a palindrome derived from the Salmonella typhimurium hisD3052 gene: Hoogsteen pairing at pH 5.2.

Weisenseel, J.P.,Reddy, G.R.,Marnett, L.J.  et al.
(2002)  Chem.Res.Toxicol.  15 : 127 - 139

PubMed: 11849038
DOI: 10.1021/tx0101090