Brand  (β version)

PDB ID: 1KOS

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Ligands
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Non-standard Residues
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5MU 5-methyluridine 5'-monophosphate
CH N3-protonated cytidine-5'-monophosphate
Glycosylation
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Structure summary

Code : 1KOS   PDBj   RCSB PDB   PDBe
Header : RNA
Title : SOLUTION NMR STRUCTURE OF AN ANALOG OF THE YEAST TRNA PHE T STEM LOOP CONTAINING RIBOTHYMIDINE AT ITS NATURALLY OCCURRING POSITION
Release Data : 1999-10-22
Compound :
mol_id molecule chains
1 5'-R(*CP*UP*GP*UP*GP*(5MU)P*UP*CP*GP*AP*UP*(CH)P*CP*AP*CP*AP*G)- 3' A
fragment: TPSIC DOMAIN OF TRNA
mutation: +C49C
other_details: C60 IS PROTONATED
Source :
mol_id organism_scientific
1
synthetic: yes
other_details: SEQUENCE FROM YEAST (SACCHAROMYCES CEREVISIAE) TRNA PHE
Authors : Koshlap, K.M., Guenther, R., Sochacka, E., Malkiewicz, A., Agris, P.F.
Keywords : TRNA, T STEM LOOP, TRNA DOMAIN, RNA HAIRPIN, RNA FOLDING, RNA
Exp. method : SOLUTION NMR
Citation :

A distinctive RNA fold: the solution structure of an analogue of the yeast tRNAPhe T Psi C domain.

Koshlap, K.M.,Guenther, R.,Sochacka, E.  et al.
(1999)  Biochemistry  38 : 8647 - 8656

PubMed: 10393540
DOI: 10.1021/bi990118w

Small Structural Ensembles for a 17-Nucleotide Mimic of the tRNA Tpsic-Loop Via Fitting Dipolar Relaxation Rates with the Quadratic Programming Algorithm

Schmitz, U.,Donati, A.,James, T.L.  et al.
(1998)  Biopolymers  46 : 329

DOI: 10.1002/(SICI)1097-0282(19981015)46:5<329::AID-BIP4>3.3.CO;2-K

The Dynamic NMR Structure of the T Psi C-Loop: Implications for the Specificity of tRNA Methylation

Yao, L.J.,James, T.L.,Kealey, J.T.  et al.
(1997)  J.Biomol.NMR  3 : 229

DOI: 10.1023/A:1018618606857

Restrained Refinement of the Monoclinic Form of Yeast Phenylalanine Transfer RNA. Temperature Factors and Dynamics, Coordinated Waters, and Base-Pair Propeller Twist Angles

Westhof, E.,Sundaralingam, M.
(1986)  Biochemistry  25 : 4868