Brand  (β version)

PDB ID: 1E3D

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Ligands
Code Name Style Show Link
F3S Fe3-s4 cluster PoSSuM
SF4 Iron/sulfur cluster PoSSuM
FSX Bis-(mu-2-oxo),[(mu-3--sulfido)-bis(mu-2--sulfido)-tris(cys-S)-tri-iron] (aqua)(glu-O)iron(II) PoSSuM
H2S Hydrosulfuric acid PoSSuM
FNE (mu-sulphido)-bis(mu-cys,S)-[tricarbonyliron-di-(cys,S)nickel(II)](Fe-ni) PoSSuM
MG Magnesium ion PoSSuM
Non-standard Residues
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Structure summary

Code : 1E3D   PDBj   RCSB PDB   PDBe
Header : HYDROGENASE
Title : [NiFe] Hydrogenase from Desulfovibrio desulfuricans ATCC 27774
Release Data : 2001-06-14
Compound :
mol_id molecule chains
1 [NiFe] hydrogenase small subunit A,C
mol_id molecule chains
2 [NiFe] hydrogenase large subunit B,D
Source :
mol_id organism_scientific
1 Desulfovibrio desulfuricans  (taxid:876)
atcc: 27774
mol_id organism_scientific
2 Desulfovibrio desulfuricans  (taxid:876)
atcc: 27774
Authors : Matias, P.M., Soares, C.M., Saraiva, L.M., Coelho, R., Morais, J., Le Gall, J., Carrondo, M.A.
Keywords : HYDROGENASE, MOLECULAR MODELLING, ELECTRON TRANSFER
Exp. method : X-RAY DIFFRACTION ( 1.80 Å )
Citation :

[Nife] Hydrogenase from Desulfovibrio Desulfuricans Atcc 27774: Gene Sequencing, Three-Dimensional Structure Determination and Refinement at 1.8 A and Modelling Studies of its Interaction with the Tetrahaem Cytochrome C3.

Matias, P.M.,Soares, C.M.,Saraiva, L.M.  et al.
(2001)  J.Biol.Inorg.Chem.  6 : 63 - 81

PubMed: 11191224
DOI: 10.1007/S007750000167

Reaction

Chain : A, C
UniProt : Q9L869 (Q9L869_DESDE)
Reaction: EC: Evidence:
Physiological Direction:
2 Fe(III)-[cytochrome c3] + H2 = 2 Fe(II)-[cytochrome c3] + 2 H(+) 1.12.2.1 ARBA:ARBA00029307
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Cofactor: Evidence: Note:
[3Fe-4S] cluster ECO:0000256 | ARBA:ARBA00001927
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[4Fe-4S] cluster ECO:0000256 | ARBA:ARBA00001966
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Chain : B, D
UniProt : Q9L868 (Q9L868_DESDE)
Reaction: EC: Evidence:
Physiological Direction:
2 Fe(III)-[cytochrome c3] + H2 = 2 Fe(II)-[cytochrome c3] + 2 H(+) 1.12.2.1 ARBA:ARBA00029307
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Cofactor: Evidence: Note:
Fe cation ECO:0000256 | PIRSR:PIRSR601501-1
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Ni(2+) ECO:0000256 | ARBA:ARBA00001967
ECO:0000256 | PIRSR:PIRSR601501-1
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