Brand  (β version)

PDB ID: 1YLS

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Ligands
Code Name Style Show Link
DAI (3as,9as)-2-pentyl-4-hydroxymethyl-3a,4,9,9a-tetrahydro-4,9[1',2']-benzeno-1h-benz[f]isoindole-1,3(2h)-dione PoSSuM
MG Magnesium ion PoSSuM
Non-standard Residues
Code Name Show
UMS 2'-methylselenyl-2'-deoxyuridine-5'-phosphate
CSL (D)-2'-methylselenyl-2'-deoxycytidine-5'-phosphate
Glycosylation
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Modification
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Structure summary

Code : 1YLS   PDBj   RCSB PDB   PDBe
Header : RNA
Title : Crystal structure of selenium-modified Diels-Alder ribozyme complexed with the product of the reaction between N-pentylmaleimide and covalently attached 9-hydroxymethylanthracene
Release Data : 2005-02-22
Compound :
mol_id molecule chains
1 RNA Diels-Alder ribozyme A,C
other_details: 11-mer
mol_id molecule chains
2 RNA Diels-Alder ribozyme B,D
mutation: A27G
other_details: 38-mer
Source :
mol_id organism_scientific
1
synthetic: yes
other_details: This RNA was chemically synthesized. The sequence was derived from the in vitro selected ribozyme catalising Diels-Alder reaction between tethered anthracene and biotinylated maleimide
mol_id organism_scientific
2
synthetic: yes
other_details: This RNA was chemically synthesized. The sequence was derived from the in vitro selected ribozyme catalising Diels-Alder reaction between tethered anthracene and biotinylated maleimide
Authors : Serganov, A., Keiper, S., Malinina, L., Tereshko, V., Skripkin, E., Hobartner, C., Polonskaia, A., Phan, A.T., Wombacher, R., Micura, R., Dauter, Z., Jaschke, A., Patel, D.J.
Keywords : carbon-carbon bond formation, catalytic mechanism, Diels-Alder reaction, ribozyme, RNA
Exp. method : X-RAY DIFFRACTION ( 3.00 Å )
Citation :

Structural basis for Diels-Alder ribozyme-catalyzed carbon-carbon bond formation.

Serganov, A.,Keiper, S.,Malinina, L.  et al.
(2005)  Nat.Struct.Mol.Biol.  12 : 218 - 224

PubMed: 15723077
DOI: 10.1038/nsmb906