Het-PDB Navi2 (PDB: 1VAQ)

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Ligands
Code	Name		Link
MG	Magnesium ion		PoSSuM
CPH	(1s)-5-deoxy-1-O-methyl-1-C-[(2r,3s)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose		PoSSuM
ARI	(2r,3r,6r)-6-hydroxy-2-methyltetrahydro-2h-pyran-3-yl acetate		PoSSuM
1GL	2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose		PoSSuM
CDR	(2r,5s,6r)-6-methyltetrahydro-2h-pyran-2,5-diol		PoSSuM
ERI	3-C-methyl-4-O-acetyl-alpha-L-olivopyranose		PoSSuM
		: Polysaccharide

Non-standard Residues
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Glycosylation
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Download interaction data: 1VAQ

Code :

1VAQ PDBj RCSB PDB PDBe

Header :

DNA

Title :

Crystal structure of the Mg2+-(chromomycin A3)2-D(TTGGCCAA)2 complex reveals GGCC binding specificity of the drug dimer chelated by metal ion

Release Data :

2004-06-22

Compound :

mol_id	molecule	chains
1	5'-D(TPTPGPGPCPCPAPA)-3'	A,B,C,D

Source :

mol_id	organism_scientific
1	Synthetic construct (taxid:32630)
	synthetic: yes other_details: The synthetic DNA oligonucleotides were purified by gel electrophoresis.

Authors :

Hou, M.H., Robinson, H., Gao, Y.G., Wang, A.H.-J.

Keywords :

Chromomycin A3, MAD, DNA duplex, GGCC site, DNA kink, CD spectra, DNA

Exp. method :

X-RAY DIFFRACTION ( 2.0 Å )

Citation :

Crystal structure of the [Mg2+-(chromomycin A3)2]-d(TTGGCCAA)2 complex reveals GGCC binding specificity of the drug dimer chelated by a metal ion

Hou, M.H.,Robinson, H.,Gao, Y.G. et al.
(2004) Nucleic Acids Res. 32 : 2214 - 2222

PDB ID: 1VAQ