Brand  (β version)

PDB ID: 1UPP

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Ligands
Code Name Style Show Link
CA Calcium ion PoSSuM
CAP 2-carboxyarabinitol-1,5-diphosphate PoSSuM
Non-standard Residues
Code Name Show
KCX Lysine nz-carboxylic acid
Glycosylation
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Modification
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Structure summary

Code : 1UPP   PDBj   RCSB PDB   PDBe
Header : LYASE
Title : SPINACH RUBISCO IN COMPLEX WITH 2-CARBOXYARABINITOL 2 BISPHOSPHATE and Calcium.
Release Data : 2003-10-14
Compound :
mol_id molecule chains synonym
1 RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN A,C,E,G RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE, RUBISCO LARGE SUBUNIT
ec: 4.1.1.39
mol_id molecule chains synonym
2 RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN I,J,K,L RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE, RUBISCO SMALL SUBUNIT
ec: 4.1.1.39
other_details: THIS IS THE SECOND STRUCTURE OF THIS COMPLEX THAT IS BEING SUBMITTED. THE PREVOUS STRUCTURE, PDB ID CODE 1UPM, WAS OBTAINED FROM A CRYSTAL OF RUBISCO-CA COOCRYSTALLIZED WITH 2-CABP WHERAS THIS STRUCTURE IS FROM A RUBISCO-CA/3PGA CRYSTAL WHICH WAS SOAKED WITH 2-CABP
Source :
mol_id organism_scientific organism_common
1 SPINACIA OLERACEA  (taxid:3562) SPINACH
organ: LEAF
mol_id organism_scientific organism_common
2 SPINACIA OLERACEA  (taxid:3562) SPINACH
organ: LEAF
Authors : Karkehabadi, S., Taylor, T.C., Andersson, I.
Keywords : LYASE, CARBON-CARBON, OXIDOREDUCTASE, PHOTOSYNTHESIS, CARBON-DIOXIDE FIXATION
Exp. method : X-RAY DIFFRACTION ( 2.3 Å )
Citation :

Calcium Supports Loop Closure But not Catalysis in Rubisco

Karehabadi, S.,Taylor, T.C.,Andersson, I.
(2003)  J.Mol.Biol.  334 : 65

PubMed: 14596800
DOI: 10.1016/J.JMB.2003.09.025

Reaction

Chain : A, C, E, G
UniProt : P00875 (RBL_SPIOL)
Reaction: EC: Evidence:
Physiological Direction:
2 (2R)-3-phosphoglycerate + 2 H(+) = CO2 + D-ribulose 1,5- bisphosphate + H2O 4.1.1.39 HAMAP- Rule:MF_01338, PubMed:26197050, PubMed:14596800, PubMed:17740342, PubMed:2118958, PubMed:8648644, PubMed:8955130, PubMed:9034362, PubMed:9092835
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D-ribulose 1,5-bisphosphate + O2 = (2R)-3-phosphoglycerate + 2-phosphoglycolate + 2 H(+) - HAMAP-Rule:MF_01338, PubMed:14596800, PubMed:17740342, PubMed:2118958, PubMed:26197050, PubMed:8648644, PubMed:8955130, PubMed:9034362, PubMed:9092835
-
Chain : I, J, K, L
UniProt : Q43832 (RBS2_SPIOL)
Reaction : -