Het-PDB Navi2 (PDB: 1UPP)

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Ligands
Code	Name		Style	Show	Link
CA	Calcium ion				PoSSuM
CAP	2-carboxyarabinitol-1,5-diphosphate				PoSSuM

Non-standard Residues
Code	Name	Show
KCX	Lysine nz-carboxylic acid

Glycosylation
Code	Name	Emphasize

Modification
Code	Name	Show

Download interaction data: 1UPP

Code :

1UPP PDBj RCSB PDB PDBe

Header :

LYASE

Title :

SPINACH RUBISCO IN COMPLEX WITH 2-CARBOXYARABINITOL 2 BISPHOSPHATE and Calcium.

Release Data :

2003-10-14

Compound :

mol_id	molecule	chains	synonym
1	RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN	A,C,E,G	RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE, RUBISCO LARGE SUBUNIT
	ec: 4.1.1.39

mol_id	molecule	chains	synonym
2	RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN	I,J,K,L	RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE, RUBISCO SMALL SUBUNIT
	ec: 4.1.1.39 other_details: THIS IS THE SECOND STRUCTURE OF THIS COMPLEX THAT IS BEING SUBMITTED. THE PREVOUS STRUCTURE, PDB ID CODE 1UPM, WAS OBTAINED FROM A CRYSTAL OF RUBISCO-CA COOCRYSTALLIZED WITH 2-CABP WHERAS THIS STRUCTURE IS FROM A RUBISCO-CA/3PGA CRYSTAL WHICH WAS SOAKED WITH 2-CABP

Source :

mol_id	organism_scientific	organism_common
1	SPINACIA OLERACEA (taxid:3562)	SPINACH
	organ: LEAF

mol_id	organism_scientific	organism_common
2	SPINACIA OLERACEA (taxid:3562)	SPINACH
	organ: LEAF

Authors :

Karkehabadi, S., Taylor, T.C., Andersson, I.

Keywords :

LYASE, CARBON-CARBON, OXIDOREDUCTASE, PHOTOSYNTHESIS, CARBON-DIOXIDE FIXATION

Exp. method :

X-RAY DIFFRACTION ( 2.3 Å )

Citation :

Calcium Supports Loop Closure But not Catalysis in Rubisco

Karehabadi, S.,Taylor, T.C.,Andersson, I.
(2003) J.Mol.Biol. 334 : 65

Chain :

A, C, E, G

UniProt :

P00875 (RBL_SPIOL)

Reaction:	EC:	Evidence:
Reaction:	Physiological Direction:	Evidence:
2 (2R)-3-phosphoglycerate + 2 H(+) = D-ribulose 1,5- bisphosphate + CO2 + H2O	4.1.1.39	HAMAP-Rule:MF_01338, PubMed:26197050, PubMed:14596800, PubMed:17740342, PubMed:2118958, PubMed:8648644, PubMed:8955130, PubMed:9034362, PubMed:9092835
	-
D-ribulose 1,5-bisphosphate + O2 = 2-phosphoglycolate + (2R)- 3-phosphoglycerate + 2 H(+)	-	HAMAP-Rule:MF_01338, PubMed:14596800, PubMed:17740342, PubMed:2118958, PubMed:26197050, PubMed:8648644, PubMed:8955130, PubMed:9034362, PubMed:9092835
	-
Cofactor:	Evidence:	Note:
Mg(2+)	ECO:0000269 \| PubMed:2118958 ECO:0000269 \| PubMed:8648644 ECO:0000269 \| PubMed:9092835	Binds 1 Mg(2+) ion per subunit (PubMed:2118958, PubMed:8648644, PubMed:9092835). Ca(2+) can substitute but is not catalytically competent (PubMed:14596800, PubMed:9034362).

PDB ID: 1UPP