Brand  (β version)

PDB ID: 1UBK

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Ligands
Code Name Style Show Link
CMO Carbon monoxide PoSSuM
F3S Fe3-s4 cluster PoSSuM
FNE (mu-sulphido)-bis(mu-cys,S)-[tricarbonyliron-di-(cys,S)nickel(II)](Fe-ni) PoSSuM
MG Magnesium ion PoSSuM
MPD (4s)-2-methyl-2,4-pentanediol PoSSuM
SF4 Iron/sulfur cluster PoSSuM
Non-standard Residues
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Glycosylation
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Structure summary

Code : 1UBK   PDBj   RCSB PDB   PDBe
Header : OXIDOREDUCTASE
Title : Three-dimensional Structure of The Carbon Monoxide Complex of [NiFe]hydrogenase From Desulufovibrio vulgaris Miyazaki F
Release Data : 2003-04-29
Compound :
mol_id molecule chains synonym
1 Periplasmic [NiFe] hydrogenase Small subunit S Small Subunit of [NiFe]hydrogenase
ec: 1.12.2.1
mol_id molecule chains synonym
2 Periplasmic [NiFe] hydrogenase Large subunit L Large Subunit of [NiFe]hydrogenase
ec: 1.12.2.1
fragment: RESIDUES 19-552
Source :
mol_id organism_scientific
1 Desulfovibrio vulgaris str. 'Miyazaki F'  (taxid:883)
strain: Miyazaki F
mol_id organism_scientific
2 Desulfovibrio vulgaris str. 'Miyazaki F'  (taxid:883)
strain: Miyazaki F
Authors : Ogata, H., Mizoguchi, Y., Mizuno, N., Miki, K., Adachi, S., Yasuoka, N., Yagi, T., Yamauchi, O., Hirota, S., Higuchi, Y.
Keywords : High resolution crystal structure, [NiFe]hydrogenase, Oxidoreductase, Carbon Monoxide Complex
Exp. method : X-RAY DIFFRACTION ( 1.18 Å )
Citation :

Structural Studies of the Carbon Monoxide Complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F: Suggestion for the Initial Activation Site for Dihydrogen

Ogata, H.,Mizoguchi, Y.,Mizuno, N.  et al.
(2002)  J.Am.Chem.Soc.  124 : 11628 - 11635

PubMed: 12296727
DOI: 10.1021/ja012645k

Reaction

Chain : S
UniProt : P21853 (PHNS_NITV9)
Reaction: EC: Evidence:
Physiological Direction:
2 Fe(III)-[cytochrome c3] + H2 = 2 Fe(II)-[cytochrome c3] + 2 H(+) 1.12.2.1 -
-
Cofactor: Evidence: Note:
[4Fe-4S] cluster ECO:0000269 | PubMed:10378274
ECO:0000269 | PubMed:9438867
Binds 2 [4Fe-4S] clusters.
[3Fe-4S] cluster ECO:0000269 | PubMed:10378274
ECO:0000269 | PubMed:9438867
Binds 1 [3Fe-4S] cluster.
Chain : L
UniProt : P21852 (PHNL_NITV9)
Reaction: EC: Evidence:
Physiological Direction:
2 Fe(III)-[cytochrome c3] + H2 = 2 Fe(II)-[cytochrome c3] + 2 H(+) 1.12.2.1 -
-
Cofactor: Evidence: Note:
Ni(2+) ECO:0000269 | PubMed:10378274
ECO:0000269 | PubMed:9438867
-
Fe cation ECO:0000269 | PubMed:10378274
ECO:0000269 | PubMed:9438867
-