Brand  (β version)

PDB ID: 1S5L

Hetero Atom Contents

  The number of atoms exceeds 100,000.
  So, it can not be displayed here.

Select unit:

Select hetatm:   

close
information
centroid:
interaction residue:

Select chain:   Sequence  

Data format:   

Color scheme of protein:

Ligands
Code Name Style Show Link
FE Fe (III) ion PoSSuM
BCT Bicarbonate ion PoSSuM
OEC Oxygen evolving system PoSSuM
CLA Chlorophyll a PoSSuM
PHO Pheophytin a PoSSuM
PL9 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone PoSSuM
BCR Beta-carotene PoSSuM
HEC Heme C PoSSuM
LMT Dodecyl-beta-D-maltoside PoSSuM
Non-standard Residues
Code Name Show
Glycosylation
Code Name Emphasize
Modification
Code Name Show

Structure summary

Code : 1S5L   PDBj   RCSB PDB   PDBe
Header : PHOTOSYNTHESIS
Title : Architecture of the photosynthetic oxygen evolving center
Release Data : 2004-02-24
Compound :
mol_id molecule chains synonym
1 Photosystem Q(B) protein A,a 32 kDa thylakoid membrane protein, Photosystem II protein D1
mol_id molecule chains
2 photosystem II core light harvesting protein B,b
mol_id molecule chains
3 photosystem II CP43 protein C,c
mol_id molecule chains
4 photosystem II reaction center D2 protein D,d
mol_id molecule chains synonym
5 Cytochrome b559 alpha subunit E,e PSII reaction center subunit V
mol_id molecule chains synonym
6 Cytochrome b559 beta subunit F,f PSII reaction center subunit VI
mol_id molecule chains
7 photosystem II PsbH protein H,h
mol_id molecule chains synonym
8 Photosystem II reaction center I protein I,i PSII 4.4 kDa protein
mol_id molecule chains
9 Photosystem II reaction center J protein J,j
mol_id molecule chains synonym
10 Photosystem II reaction center protein K K,k PSII-K
mol_id molecule chains synonym
11 Photosystem II reaction center L protein L,l PSII 5 kDa protein
mol_id molecule chains synonym
12 Photosystem II reaction center M protein M,m PSII-M
mol_id molecule chains synonym
13 Photosystem II manganese-stabilizing polypeptide O,o MSP
mol_id molecule chains
14 photosystem II PsbT protein T,t
mol_id molecule chains synonym
15 Photosystem II 12 kDa extrinsic protein U,u PS II complex 12 kDa extrinsic protein, PSII-U
mol_id molecule chains synonym
16 Cytochrome c-550 V,v C550, Low potential cytochrome c
mol_id molecule chains
17 photosystem II PsbX protein X,x
mol_id molecule chains
18 Photosystem II PsbN protein N,n
mol_id molecule chains synonym
19 Photosystem II reaction center Z protein Z,z photosystem II PsbZ protein
Source :
mol_id organism_scientific
1 Thermosynechococcus elongatus  (taxid:146786)
mol_id organism_scientific
2 Thermosynechococcus elongatus  (taxid:146786)
mol_id organism_scientific
3 Thermosynechococcus elongatus  (taxid:146786)
mol_id organism_scientific
4 Thermosynechococcus elongatus  (taxid:146786)
mol_id organism_scientific
5 Thermosynechococcus elongatus  (taxid:146786)
mol_id organism_scientific
6 Thermosynechococcus elongatus  (taxid:146786)
mol_id organism_scientific
7 Thermosynechococcus elongatus  (taxid:146786)
mol_id organism_scientific
8 Thermosynechococcus elongatus  (taxid:146786)
mol_id organism_scientific
9 Thermosynechococcus elongatus  (taxid:146786)
mol_id organism_scientific
10 Thermosynechococcus elongatus  (taxid:146786)
mol_id organism_scientific
11 Thermosynechococcus elongatus  (taxid:146786)
mol_id organism_scientific
12 Thermosynechococcus elongatus  (taxid:146786)
mol_id organism_scientific
13 Thermosynechococcus elongatus  (taxid:146786)
mol_id organism_scientific
14 Thermosynechococcus elongatus  (taxid:146786)
mol_id organism_scientific
15 Thermosynechococcus elongatus  (taxid:146786)
mol_id organism_scientific
16 Thermosynechococcus elongatus  (taxid:146786)
mol_id organism_scientific
17 Thermosynechococcus elongatus  (taxid:146786)
mol_id organism_scientific
18 Thermosynechococcus elongatus  (taxid:146786)
mol_id organism_scientific
19 Thermosynechococcus elongatus  (taxid:146786)
Authors : Ferreira, K.N., Iverson, T.M., Maghlaoui, K., Barber, J., Iwata, S.
Keywords : photosystem, photosynthesis, oxygen-evolving, tetra-manganese, membrane
Exp. method : X-RAY DIFFRACTION ( 3.5 Å )
Citation :

Architecture of the Photosynthetic Oxygen-Evolving Center

Ferreira, K.N.,Iverson, T.M.,Maghlaoui, K.  et al.
(2004)  Science  303 : 1831 - 1838

PubMed: 14764885
DOI: 10.1126/science.1093087

Reaction

Chain : A, a
UniProt : P0A444 (PSBA1_THEVB)
Reaction: EC: Evidence:
Physiological Direction:
2 a plastoquinone + 2 H2O + 4 hnu = 2 a plastoquinol + O2 1.10.3.9 HAMAP-Rule:MF_01379, PubMed:20558739, PubMed:25006873
-
Chain : B, b
UniProt : Q8DIQ1 (PSBB_THEVB)
Reaction : -
Chain : C, c
UniProt : Q8DIF8 (PSBC_THEVB)
Reaction : -
Chain : D, d
UniProt : Q8CM25 (PSBD_THEVB)
Reaction: EC: Evidence:
Physiological Direction:
2 a plastoquinone + 2 H2O + 4 hnu = 2 a plastoquinol + O2 1.10.3.9 HAMAP-Rule:MF_01383, PubMed:20558739, PubMed:25006873
-
Chain : E, e
UniProt : Q8DIP0 (PSBE_THEVB)
Reaction : -
Chain : F, f
UniProt : Q8DIN9 (PSBF_THEVB)
Reaction : -
Chain : H, h
UniProt : Q8DJ43 (PSBH_THEVB)
Reaction : -
Chain : I, i
UniProt : Q8DJZ6 (PSBI_THEVB)
Reaction : -
Chain : J, j
UniProt : P59087 (PSBJ_THEVB)
Reaction : -
Chain : K, k
UniProt : Q9F1K9 (PSBK_THEVB)
Reaction : -
Chain : L, l
UniProt : Q8DIN8 (PSBL_THEVB)
Reaction : -
Chain : M, m
UniProt : Q8DHA7 (PSBM_THEVB)
Reaction : -
Chain : O, o
UniProt : P0A431 (PSBO_THEVB)
Reaction : -
Chain : T, t
UniProt : Q8DIQ0 (PSBT_THEVB)
Reaction : -
Chain : U, u
UniProt : Q9F1L5 (PSBU_THEVB)
Reaction : -
Chain : V, v
UniProt : P0A386 (CY550_THEVB)
Reaction : -
Chain : X, x
UniProt : Q9F1R6 (PSBX_THEVB)
Reaction : -
Chain : Z, z
UniProt : Q8DHJ2 (PSBZ_THEVB)
Reaction : -