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Ligands
Code Name Style Show Link
DGI 2'-deoxyguanosine-5'-diphosphate
DGT 2'-deoxyguanosine-5'-triphosphate
Non-standard Residues
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Glycosylation
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Code : 1S59   PDBj   RCSB PDB   PDBe
Header : TRANSFERASE
Title : Structure of nucleoside diphosphate kinase 2 with bound dGTP from Arabidopsis
Release Data : 2004-11-30
Compound :
mol_id molecule chains synonym
1 Nucleoside diphosphate kinase II A,B,C,D,E,F nucleoside diphosphate kinase 2, NDK II, NDP kinase II, NDPK II, NDPK Ia
ec: 2.7.4.6
Source :
mol_id organism_scientific organism_common expression_system
1 Arabidopsis thaliana  (taxid:3702) Thale cress Escherichia coli BL21(DE3)  (taxid:469008)
gene: NDPK2
expression_system_strain: BL21(DE3)
expression_system_vector_type: plasmid
expression_system_plasmid: pGEX-4T-1
Authors : Im, Y.J., Kim, J.-I., Shen, Y., Na, Y., Han, Y.-J., Kim, S.-H., Song, P.-S., Eom, S.H.
Keywords : transferase, kinase
Exp. method : X-RAY DIFFRACTION ( 2.60 Å )
Citation :

Structural analysis of Arabidopsis thaliana nucleoside diphosphate kinase-2 for phytochrome-mediated light signaling

Im, Y.J.,Kim, J.-I.,Shen, Y.  et al.
(2004)  J.Mol.Biol.  343 : 659 - 670

PubMed: 15465053
DOI: 10.1016/j.jmb.2004.08.054

Chain : A, B, C, D, E, F
UniProt : O64903 (NDK2_ARATH)
Reaction: EC: Evidence:
Physiological Direction:
a 2'-deoxyribonucleoside 5'-diphosphate + ATP = a 2'- deoxyribonucleoside 5'-triphosphate + ADP 2.7.4.6 -
-
a ribonucleoside 5'-diphosphate + ATP = a ribonucleoside 5'- triphosphate + ADP 2.7.4.6 -
-