Brand  (β version)

PDB ID: 1RB8

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Ligands
Code Name Style Show Link
DC 2'-deoxycytidine-5'-monophosphate PoSSuM
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Glycosylation
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Structure summary

Code : 1RB8   PDBj   RCSB PDB   PDBe
Header : Virus/DNA
Title : The phiX174 DNA binding protein J in two different capsid environments.
Release Data : 2004-04-13
Compound :
mol_id molecule chains synonym
1 Capsid protein F F protein, GPF
mol_id molecule chains synonym
2 Major spike protein G G protein, GPG
mol_id molecule chains synonym
3 Small core protein J J protein
mol_id molecule chains
4 DNA (5'-D(P*CP*AP*AP*A)-3') X
Source :
mol_id organism_scientific
1 Enterobacteria phage alpha3  (taxid:10849)
other_details: wt alpha3 capsid protein F
mol_id organism_scientific
2 Enterobacteria phage alpha3  (taxid:10849)
other_details: wt alpha3 spike protein G
mol_id organism_scientific expression_system
3 Enterobacteria phage phiX174  (taxid:10847) Escherichia coli  (taxid:562)
gene: J
expression_system_strain: recA- cells
expression_system_vector_type: virus
mol_id organism_scientific
4
synthetic: yes
Authors : Bernal, R.A., Hafenstein, S., Esmeralda, R., Fane, B.A., Rossmann, M.G.
Keywords : bacteriophage alpha3, bacteriophage phiX174, bacteriophage alpha3 chimera, alpha3, phiX174, three-dimentional structure, virion, Microviridae, Icosahedral virus, Virus-DNA COMPLEX
Exp. method : X-RAY DIFFRACTION ( 3.50 Å )
Citation :

The phiX174 Protein J Mediates DNA Packaging and Viral Attachment to Host Cells.

Bernal, R.A.,Hafenstein, S.,Esmeralda, R.  et al.
(2004)  J.Mol.Biol.  337 : 1109 - 1122

PubMed: 15046981
DOI: 10.1016/j.jmb.2004.02.033

Structural Studies of Bacteriophage Alpha3 Assembly

Bernal, R.A.,Hafenstein, S.,Olson, N.H.  et al.
(2003)  J.Mol.Biol.  325 : 11 - 24

DOI: 10.1016/S0022-2836(02)01201-9

The role of scaffolding proteins in the assembly of the small, single-stranded DNA virus phiX174.

Dokland, T.,Bernal, R.A.,Burch, A.  et al.
(1999)  J.Mol.Biol.  288 : 595 - 608

DOI: 10.1006/jmbi.1999.2699

Atomic structure of single-stranded DNA bacteriophage phi X174 and its functional implications.

McKenna, R.,Xia, D.,Willingmann, P.  et al.
(1992)  Nature  355 : 137 - 143

DOI: 10.1038/355137a0

Reaction

Chain : F
UniProt : P08767 (CAPSD_BPAL3)
Reaction : -
Chain : G
UniProt : P31281 (G_BPAL3)
Reaction : -
Chain : J
UniProt : P69592 (J_BPPHS)
Reaction : -