Het-PDB Navi2 (PDB: 1Q9Y)

The number of atoms exceeds 100,000.
So, it can not be displayed here.

Select unit:

Select hetatm:

information

centroid:

interaction residue:

Select chain: Sequence Hide other chain(s)

Data format:

Color scheme of protein:

Ligands
Code	Name		Style	Show	Link
CA	Calcium ion				PoSSuM
DCP	2'-deoxycytidine-5'-triphosphate				PoSSuM

Non-standard Residues
Code	Name	Show
8OG	8-oxo-2'-deoxy-guanosine-5'-monophosphate
DOC	2',3'-dideoxycytidine-5'-monophosphate

Glycosylation
Code	Name	Emphasize

Modification
Code	Name	Show

Download interaction data: 1Q9Y

Code :

1Q9Y PDBj RCSB PDB PDBe

Header :

TRANSFERASE, REPLICATION/DNA

Title :

CRYSTAL STRUCTURE OF ENTEROBACTERIA PHAGE RB69 GP43 DNA POLYMERASE COMPLEXED WITH 8-OXOGUANOSINE CONTAINING DNA

Release Data :

2004-04-27

Compound :

mol_id	molecule	chains
1	5'-AC(8-OXOGUANOSINE)GGTAAGCAGTCCGCG-3'	T

mol_id	molecule	chains
2	5'-GCGGACTGCTTAC(DIDEOXYCYTIDINE)-3'	P

mol_id	molecule	chains	synonym
3	DNA POLYMERASE	A	GP43
	ec: 2.7.7.7 mutation: D222A, D327A

Source :

mol_id	organism_scientific
1
	synthetic: yes other_details: DNA SYNTHESIZER

mol_id	organism_scientific
2
	synthetic: yes other_details: DNA SYNTHESIZER

mol_id	organism_scientific	expression_system
3	Enterobacteria phage RB69 (taxid:12353)	Escherichia coli (taxid:562)
	gene: 43 expression_system_strain: M15 expression_system_vector_type: PLASMID expression_system_plasmid: PQE30

Authors :

Freisinger, E., Grollman, A.P., Miller, H., Kisker, C.

Keywords :

PROTEIN_DNA COMPLEX, TRANSFERASE, REPLICATION-DNA COMPLEX

Exp. method :

X-RAY DIFFRACTION ( 2.8 Å )

Citation :

Lesion (in)tolerance reveals insights into DNA replication fidelity.

Freisinger, E.,Grollman, A.P.,Miller, H. et al.
(2004) Embo J. 23 : 1494 - 1505

Chain :

UniProt :

Q38087 (DPOL_BPR69)

Reaction:	EC:	Evidence:
Reaction:	Physiological Direction:	Evidence:
DNA(n) + a 2'-deoxyribonucleoside 5'-triphosphate = DNA(n+1) + diphosphate	2.7.7.7	HAMAP-Rule:MF_04100, PubMed:17098747, PubMed:18503083, PubMed:20795733, PubMed:22616982, PubMed:24116139
	-
Cofactor:	Evidence:	Note:
Mg(2+)	ECO:0000255 \| HAMAP-Rule:MF_04100 ECO:0000269 \| PubMed:20166752 ECO:0000269 \| PubMed:22026756 ECO:0000305 \| PubMed:11389835 ECO:0000305 \| PubMed:15057282 ECO:0000305 \| PubMed:15057283 ECO:0000305 \| PubMed:17718515 ECO:0000305 \| PubMed:18503083 ECO:0000305 \| PubMed:20166748 ECO:0000305 \| PubMed:21158418 ECO:0000305 \| PubMed:21566148 ECO:0000305 \| PubMed:21923197 ECO:0000305 \| PubMed:22571765 ECO:0000305 \| PubMed:23214497 ECO:0000305 \| PubMed:23921641 ECO:0000305 \| PubMed:24116139	-

PDB ID: 1Q9Y