Het-PDB Navi2 (PDB: 1P3X)

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Ligands
Code	Name		Style	Show	Link

Non-standard Residues
Code	Name	Show
PDU	5(1-propynyl)-2'-deoxyuridine-5-monophosphate

Glycosylation
Code	Name	Emphasize

Modification
Code	Name	Show
DCM	2'-deoxycytidine-5'-monophosphate

Download interaction data: 1P3X

Code :

1P3X PDBj RCSB PDB PDBe

Header :

DNA

Title :

INTRAMOLECULAR DNA TRIPLEX WITH 1-PROPYNYL DEOXYURIDINE IN THE THIRD STRAND, NMR, 10 STRUCTURES

Release Data :

1998-05-06

Compound :

mol_id	molecule	chains
1	DNA (5'-D(APGPAPGPAPGPAPA)-3')	A
	other_details: HEXAKIS (ETHYLENE GLYCOL) LINKERS BETWEEN A 8 AND T 9 AND BETWEEN T 16 AND T 17. C 18, C 20, AND C 22 ARE PROTONATED

mol_id	molecule	chains
2	DNA (5'-D(TPTPCPTPCPTPCPT)-3')	B
	other_details: HEXAKIS (ETHYLENE GLYCOL) LINKERS BETWEEN A 8 AND T 9 AND BETWEEN T 16 AND T 17. C 18, C 20, AND C 22 ARE PROTONATED

mol_id	molecule	chains
3	DNA (5'-D((PDU)PCP(PDU)P(DCM)P(PDU)PCP(PDU)P(PDU))-3')	C

Source :

mol_id	organism_scientific
1	Synthetic construct (taxid:32630)
	synthetic: yes

mol_id	organism_scientific
2	Synthetic construct (taxid:32630)
	synthetic: yes

mol_id	organism_scientific
3	Synthetic construct (taxid:32630)
	synthetic: yes

Authors :

Phipps, A.K., Tarkoy, M., Schultze, P., Feigon, J.

Keywords :

OLIGONUCLEOTIDE, TRIPLEX, PROPYNE, DNA

Exp. method :

SOLUTION NMR

Citation :

Solution structure of an intramolecular DNA triplex containing 5-(1-propynyl)-2'-deoxyuridine residues in the third strand.

Phipps, A.K.,Tarkoy, M.,Schultze, P. et al.
(1998) Biochemistry 37 : 5820 - 5830

PDB ID: 1P3X