Brand  (β version)

color scheme of protein:

hetatm:

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information
centroid:
interaction residue:

chain: Hide other chain(s)

Ligands
Code Name Link
DC 2'-deoxycytidine-5'-monophosphate
DCM 2'-deoxycytidine-5'-monophosphate
PDU 5(1-propynyl)-2'-deoxyuridine-5-monophosphate
Code : 1P3X
Header : DNA
Title : INTRAMOLECULAR DNA TRIPLEX WITH 1-PROPYNYL DEOXYURIDINE IN THE THIRD STRAND, NMR, 10 STRUCTURES
Release Data : 1998-05-06
Compound :
mol_id molecule chains
1 DNA (5'-D(*AP*GP*AP*GP*AP*GP*AP*A)-3') A
other_details: HEXAKIS (ETHYLENE GLYCOL) LINKERS BETWEEN A 8 AND T 9 AND BETWEEN T 16 AND T 17. C 18, C 20, AND C 22 ARE PROTONATED
mol_id molecule chains
2 DNA (5'-D(*TP*TP*CP*TP*CP*TP*CP*T)-3') B
other_details: HEXAKIS (ETHYLENE GLYCOL) LINKERS BETWEEN A 8 AND T 9 AND BETWEEN T 16 AND T 17. C 18, C 20, AND C 22 ARE PROTONATED
Source :
mol_id organism_scientific
1
synthetic: yes
mol_id organism_scientific
2
synthetic: yes
Authors : Phipps, A.K., Tarkoy, M., Schultze, P., Feigon, J.
Keywords : OLIGONUCLEOTIDE, TRIPLEX, PROPYNE, DNA
Exp. method : SOLUTION NMR
Citation :

Solution structure of an intramolecular DNA triplex containing 5-(1-propynyl)-2'-deoxyuridine residues in the third strand.

Phipps, A.K.,Tarkoy, M.,Schultze, P.  et al.
(1998)  Biochemistry  37 : 5820 - 5830

PubMed: 9558315
DOI: 10.1021/bi972811u