Brand  (β version)

color scheme of protein:

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Modified Residues
Code Name Link
YG Wybutosine
1MA 6-hydro-1-methyladenosine-5'-monophosphate
2MG 2n-methylguanosine-5'-monophosphate
5MC 5-methylcytidine-5'-monophosphate
5MU 5-methyluridine 5'-monophosphate
7MG 7n-methyl-8-hydroguanosine-5'-monophosphate
H2U 5,6-dihydrouridine-5'-monophosphate
M2G N2-dimethylguanosine-5'-monophosphate
OMC O2'-methylycytidine-5'-monophosphate
OMG O2'-methylguanosine-5'-monophosphate
PSU Pseudouridine-5'-monophosphate
Code : 1ML5
Header : RIBOSOME
Title : Structure of the E. coli ribosomal termination complex with release factor 2
Release Data : 2003-01-14
Compound :
mol_id molecule chains
1 30S 16S RIBOSOMAL RNA A
mol_id molecule chains
2 T-RNA(PHE) B
other_details: tRNA P-SITE
mol_id molecule chains
3 A- AND P-SITE MESSENGER RNA CODONS C
other_details: 6 NT LONG MRNA FRAGMENT
mol_id molecule chains
4 50S 23S RIBOSOMAL RNA a
mol_id molecule chains
5 50S 5S RIBOSOMAL RNA b
mol_id molecule chains synonym
6 Peptide chain release factor 2 Z RF-2; translation releasing factor RF-2
other_details: EM reconstruction of the backbone trace of the ribosome
mol_id molecule chains
7 30S RIBOSOMAL PROTEIN S2 E
mol_id molecule chains
8 30S RIBOSOMAL PROTEIN S3 F
mol_id molecule chains
9 30S RIBOSOMAL PROTEIN S4 G
mol_id molecule chains
10 30S RIBOSOMAL PROTEIN S5 H
mol_id molecule chains
11 30S RIBOSOMAL PROTEIN S6 I
mol_id molecule chains
12 30S RIBOSOMAL PROTEIN S7 J
mol_id molecule chains
13 30S RIBOSOMAL PROTEIN S8 K
mol_id molecule chains
14 30S RIBOSOMAL PROTEIN S9 L
mol_id molecule chains
15 30S RIBOSOMAL PROTEIN S10 M
mol_id molecule chains
16 30S RIBOSOMAL PROTEIN S11 N
mol_id molecule chains
17 30S RIBOSOMAL PROTEIN S12 O
mol_id molecule chains
18 30S RIBOSOMAL PROTEIN S13 P
mol_id molecule chains
19 30S RIBOSOMAL PROTEIN S14 Q
mol_id molecule chains
20 30S RIBOSOMAL PROTEIN S15 R
mol_id molecule chains
21 30S RIBOSOMAL PROTEIN S16 S
mol_id molecule chains
22 30S RIBOSOMAL PROTEIN S17 T
mol_id molecule chains
23 30S RIBOSOMAL PROTEIN S18 U
mol_id molecule chains
24 30S RIBOSOMAL PROTEIN S19 V
mol_id molecule chains
25 30S RIBOSOMAL PROTEIN S20 W
mol_id molecule chains
26 30S RIBOSOMAL PROTEIN THX X
mol_id molecule chains
27 50S RIBOSOMAL PROTEIN L1 c
mol_id molecule chains
28 50S RIBOSOMAL PROTEIN L2 d
mol_id molecule chains
29 50S RIBOSOMAL PROTEIN L3 e
mol_id molecule chains
30 50S RIBOSOMAL PROTEIN L4 f
mol_id molecule chains
31 50S RIBOSOMAL PROTEIN L5 g
mol_id molecule chains
32 50S RIBOSOMAL PROTEIN L6 h
mol_id molecule chains
33 50S RIBOSOMAL PROTEIN L11 l
mol_id molecule chains
34 50S RIBOSOMAL PROTEIN L13 m
mol_id molecule chains
35 50S RIBOSOMAL PROTEIN L14 n
mol_id molecule chains
36 50S RIBOSOMAL PROTEIN L15 o
mol_id molecule chains
37 50S RIBOSOMAL PROTEIN L16 p
mol_id molecule chains
38 50S RIBOSOMAL PROTEIN L18 q
mol_id molecule chains
39 50S RIBOSOMAL PROTEIN L19 r
mol_id molecule chains
40 50S RIBOSOMAL PROTEIN L22 s
mol_id molecule chains
41 50S RIBOSOMAL PROTEIN L23 t
mol_id molecule chains
42 50S RIBOSOMAL PROTEIN L24 u
mol_id molecule chains
43 50S RIBOSOMAL PROTEIN L25 v
mol_id molecule chains
44 50S RIBOSOMAL PROTEIN L29 w
mol_id molecule chains
45 50S RIBOSOMAL PROTEIN L30 x
Source :
mol_id organism_scientific
1 Escherichia coli  (taxid:562)
mol_id organism_scientific
2 Escherichia coli  (taxid:562)
mol_id organism_scientific
3 Escherichia coli  (taxid:562)
mol_id organism_scientific
4 Escherichia coli  (taxid:562)
mol_id organism_scientific
5 Escherichia coli  (taxid:562)
mol_id organism_scientific expression_system
6 Escherichia coli  (taxid:562) Escherichia coli BL21(DE3)  (taxid:469008)
gene: prfB/SupK
expression_system_strain: BL21 (DE3)
expression_system_vector_type: plasmid
expression_system_plasmid: pET11a
mol_id organism_scientific
7 Escherichia coli  (taxid:562)
mol_id organism_scientific
8 Escherichia coli  (taxid:562)
mol_id organism_scientific
9 Escherichia coli  (taxid:562)
mol_id organism_scientific
10 Escherichia coli  (taxid:562)
mol_id organism_scientific
11 Escherichia coli  (taxid:562)
mol_id organism_scientific
12 Escherichia coli  (taxid:562)
mol_id organism_scientific
13 Escherichia coli  (taxid:562)
mol_id organism_scientific
14 Escherichia coli  (taxid:562)
mol_id organism_scientific
15 Escherichia coli  (taxid:562)
mol_id organism_scientific
16 Escherichia coli  (taxid:562)
mol_id organism_scientific
17 Escherichia coli  (taxid:562)
mol_id organism_scientific
18 Escherichia coli  (taxid:562)
mol_id organism_scientific
19 Escherichia coli  (taxid:562)
mol_id organism_scientific
20 Escherichia coli  (taxid:562)
mol_id organism_scientific
21 Escherichia coli  (taxid:562)
mol_id organism_scientific
22 Escherichia coli  (taxid:562)
mol_id organism_scientific
23 Escherichia coli  (taxid:562)
mol_id organism_scientific
24 Escherichia coli  (taxid:562)
mol_id organism_scientific
25 Escherichia coli  (taxid:562)
mol_id organism_scientific
26 Escherichia coli  (taxid:562)
mol_id organism_scientific
27 Escherichia coli  (taxid:562)
mol_id organism_scientific
28 Escherichia coli  (taxid:562)
mol_id organism_scientific
29 Escherichia coli  (taxid:562)
mol_id organism_scientific
30 Escherichia coli  (taxid:562)
mol_id organism_scientific
31 Escherichia coli  (taxid:562)
mol_id organism_scientific
32 Escherichia coli  (taxid:562)
mol_id organism_scientific
33 Escherichia coli  (taxid:562)
mol_id organism_scientific
34 Escherichia coli  (taxid:562)
mol_id organism_scientific
35 Escherichia coli  (taxid:562)
mol_id organism_scientific
36 Escherichia coli  (taxid:562)
mol_id organism_scientific
37 Escherichia coli  (taxid:562)
mol_id organism_scientific
38 Escherichia coli  (taxid:562)
mol_id organism_scientific
39 Escherichia coli  (taxid:562)
mol_id organism_scientific
40 Escherichia coli  (taxid:562)
mol_id organism_scientific
41 Escherichia coli  (taxid:562)
mol_id organism_scientific
42 Escherichia coli  (taxid:562)
mol_id organism_scientific
43 Escherichia coli  (taxid:562)
mol_id organism_scientific
44 Escherichia coli  (taxid:562)
mol_id organism_scientific
45 Escherichia coli  (taxid:562)
Authors : Klaholz, B.P., Pape, T., Zavialov, A.V., Myasnikov, A.G., Orlova, E.V., Vestergaard, B., Ehrenberg, M., van Heel, M.
Keywords : E. coli, ribosome, termination of protein synthesis, release factor, cryo-eletron microscopy, angular reconstitution
Exp. method : ELECTRON MICROSCOPY ( 14 Å )
Citation :

Structure of the Escherichia coli ribosomal termination complex with release factor 2

Klaholz, B.P.,Pape, T.,Zavialov, A.V.  et al.
(2003)  Nature  421 : 90 - 94

PubMed: 12511961
DOI: 10.1038/nature01225

Chain : Z
UniProt : P07012 (RF2_ECOLI)
Reaction : -