Het-PDB Navi2 (PDB: 1ML5)

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Ligands
Code	Name		Style	Show	Link

Non-standard Residues
Code	Name	Show
1MA	6-hydro-1-methyladenosine-5'-monophosphate
2MG	2n-methylguanosine-5'-monophosphate
5MC	5-methylcytidine-5'-monophosphate
5MU	5-methyluridine 5'-monophosphate
7MG	7n-methyl-8-hydroguanosine-5'-monophosphate
H2U	5,6-dihydrouridine-5'-monophosphate
M2G	N2-dimethylguanosine-5'-monophosphate
OMC	O2'-methylycytidine-5'-monophosphate
OMG	O2'-methylguanosine-5'-monophosphate
PSU	Pseudouridine-5'-monophosphate
YG	Wybutosine

Glycosylation
Code	Name	Emphasize

Modification
Code	Name	Show

Download interaction data: 1ML5

Code :

1ML5 PDBj RCSB PDB PDBe

Header :

RIBOSOME

Title :

Structure of the E. coli ribosomal termination complex with release factor 2

Release Data :

2003-01-14

Compound :

mol_id	molecule	chains
1	30S 16S RIBOSOMAL RNA	A

mol_id	molecule	chains
2	T-RNA(PHE)	B
	other_details: tRNA P-SITE

mol_id	molecule	chains
3	A- AND P-SITE MESSENGER RNA CODONS	C
	other_details: 6 NT LONG MRNA FRAGMENT

mol_id	molecule	chains
4	50S 23S RIBOSOMAL RNA	a

mol_id	molecule	chains
5	50S 5S RIBOSOMAL RNA	b

mol_id	molecule	chains	synonym
6	Peptide chain release factor 2	Z	RF-2; translation releasing factor RF-2
	other_details: EM reconstruction of the backbone trace of the ribosome

mol_id	molecule	chains
7	30S RIBOSOMAL PROTEIN S2	E

mol_id	molecule	chains
8	30S RIBOSOMAL PROTEIN S3	F

mol_id	molecule	chains
9	30S RIBOSOMAL PROTEIN S4	G

mol_id	molecule	chains
10	30S RIBOSOMAL PROTEIN S5	H

mol_id	molecule	chains
11	30S RIBOSOMAL PROTEIN S6	I

mol_id	molecule	chains
12	30S RIBOSOMAL PROTEIN S7	J

mol_id	molecule	chains
13	30S RIBOSOMAL PROTEIN S8	K

mol_id	molecule	chains
14	30S RIBOSOMAL PROTEIN S9	L

mol_id	molecule	chains
15	30S RIBOSOMAL PROTEIN S10	M

mol_id	molecule	chains
16	30S RIBOSOMAL PROTEIN S11	N

mol_id	molecule	chains
17	30S RIBOSOMAL PROTEIN S12	O

mol_id	molecule	chains
18	30S RIBOSOMAL PROTEIN S13	P

mol_id	molecule	chains
19	30S RIBOSOMAL PROTEIN S14	Q

mol_id	molecule	chains
20	30S RIBOSOMAL PROTEIN S15	R

mol_id	molecule	chains
21	30S RIBOSOMAL PROTEIN S16	S

mol_id	molecule	chains
22	30S RIBOSOMAL PROTEIN S17	T

mol_id	molecule	chains
23	30S RIBOSOMAL PROTEIN S18	U

mol_id	molecule	chains
24	30S RIBOSOMAL PROTEIN S19	V

mol_id	molecule	chains
25	30S RIBOSOMAL PROTEIN S20	W

mol_id	molecule	chains
26	30S RIBOSOMAL PROTEIN THX	X

mol_id	molecule	chains
27	50S RIBOSOMAL PROTEIN L1	c

mol_id	molecule	chains
28	50S RIBOSOMAL PROTEIN L2	d

mol_id	molecule	chains
29	50S RIBOSOMAL PROTEIN L3	e

mol_id	molecule	chains
30	50S RIBOSOMAL PROTEIN L4	f

mol_id	molecule	chains
31	50S RIBOSOMAL PROTEIN L5	g

mol_id	molecule	chains
32	50S RIBOSOMAL PROTEIN L6	h

mol_id	molecule	chains
33	50S RIBOSOMAL PROTEIN L11	l

mol_id	molecule	chains
34	50S RIBOSOMAL PROTEIN L13	m

mol_id	molecule	chains
35	50S RIBOSOMAL PROTEIN L14	n

mol_id	molecule	chains
36	50S RIBOSOMAL PROTEIN L15	o

mol_id	molecule	chains
37	50S RIBOSOMAL PROTEIN L16	p

mol_id	molecule	chains
38	50S RIBOSOMAL PROTEIN L18	q

mol_id	molecule	chains
39	50S RIBOSOMAL PROTEIN L19	r

mol_id	molecule	chains
40	50S RIBOSOMAL PROTEIN L22	s

mol_id	molecule	chains
41	50S RIBOSOMAL PROTEIN L23	t

mol_id	molecule	chains
42	50S RIBOSOMAL PROTEIN L24	u

mol_id	molecule	chains
43	50S RIBOSOMAL PROTEIN L25	v

mol_id	molecule	chains
44	50S RIBOSOMAL PROTEIN L29	w

mol_id	molecule	chains
45	50S RIBOSOMAL PROTEIN L30	x

Source :

mol_id	organism_scientific
1	Escherichia coli (taxid:562)

mol_id	organism_scientific
2	Escherichia coli (taxid:562)

mol_id	organism_scientific
3	Escherichia coli (taxid:562)

mol_id	organism_scientific
4	Escherichia coli (taxid:562)

mol_id	organism_scientific
5	Escherichia coli (taxid:562)

mol_id	organism_scientific	expression_system
6	Escherichia coli (taxid:562)	Escherichia coli BL21(DE3) (taxid:469008)
	gene: prfB/SupK expression_system_strain: BL21 (DE3) expression_system_vector_type: plasmid expression_system_plasmid: pET11a

mol_id	organism_scientific
7	Escherichia coli (taxid:562)

mol_id	organism_scientific
8	Escherichia coli (taxid:562)

mol_id	organism_scientific
9	Escherichia coli (taxid:562)

mol_id	organism_scientific
10	Escherichia coli (taxid:562)

mol_id	organism_scientific
11	Escherichia coli (taxid:562)

mol_id	organism_scientific
12	Escherichia coli (taxid:562)

mol_id	organism_scientific
13	Escherichia coli (taxid:562)

mol_id	organism_scientific
14	Escherichia coli (taxid:562)

mol_id	organism_scientific
15	Escherichia coli (taxid:562)

mol_id	organism_scientific
16	Escherichia coli (taxid:562)

mol_id	organism_scientific
17	Escherichia coli (taxid:562)

mol_id	organism_scientific
18	Escherichia coli (taxid:562)

mol_id	organism_scientific
19	Escherichia coli (taxid:562)

mol_id	organism_scientific
20	Escherichia coli (taxid:562)

mol_id	organism_scientific
21	Escherichia coli (taxid:562)

mol_id	organism_scientific
22	Escherichia coli (taxid:562)

mol_id	organism_scientific
23	Escherichia coli (taxid:562)

mol_id	organism_scientific
24	Escherichia coli (taxid:562)

mol_id	organism_scientific
25	Escherichia coli (taxid:562)

mol_id	organism_scientific
26	Escherichia coli (taxid:562)

mol_id	organism_scientific
27	Escherichia coli (taxid:562)

mol_id	organism_scientific
28	Escherichia coli (taxid:562)

mol_id	organism_scientific
29	Escherichia coli (taxid:562)

mol_id	organism_scientific
30	Escherichia coli (taxid:562)

mol_id	organism_scientific
31	Escherichia coli (taxid:562)

mol_id	organism_scientific
32	Escherichia coli (taxid:562)

mol_id	organism_scientific
33	Escherichia coli (taxid:562)

mol_id	organism_scientific
34	Escherichia coli (taxid:562)

mol_id	organism_scientific
35	Escherichia coli (taxid:562)

mol_id	organism_scientific
36	Escherichia coli (taxid:562)

mol_id	organism_scientific
37	Escherichia coli (taxid:562)

mol_id	organism_scientific
38	Escherichia coli (taxid:562)

mol_id	organism_scientific
39	Escherichia coli (taxid:562)

mol_id	organism_scientific
40	Escherichia coli (taxid:562)

mol_id	organism_scientific
41	Escherichia coli (taxid:562)

mol_id	organism_scientific
42	Escherichia coli (taxid:562)

mol_id	organism_scientific
43	Escherichia coli (taxid:562)

mol_id	organism_scientific
44	Escherichia coli (taxid:562)

mol_id	organism_scientific
45	Escherichia coli (taxid:562)

Authors :

Klaholz, B.P., Pape, T., Zavialov, A.V., Myasnikov, A.G., Orlova, E.V., Vestergaard, B., Ehrenberg, M., van Heel, M.

Keywords :

E. coli, ribosome, termination of protein synthesis, release factor, cryo-eletron microscopy, angular reconstitution

Exp. method :

ELECTRON MICROSCOPY ( 14 Å )

Citation :

Structure of the Escherichia coli ribosomal termination complex with release factor 2

Klaholz, B.P.,Pape, T.,Zavialov, A.V. et al.
(2003) Nature 421 : 90 - 94

PubMed: 12511961
DOI: 10.1038/nature01225

Chain :	Z
UniProt :	P07012 (RF2_ECOLI)
Reaction :	-

PDB ID: 1ML5

Hetero Atom Contents

Structure summary

Reaction