Brand  (β version)

PDB ID: 1KO0

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Ligands
Code Name Style Show Link
DLY D-lysine PoSSuM
LYS Lysine PoSSuM
PLP Pyridoxal-5'-phosphate PoSSuM
Non-standard Residues
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Glycosylation
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Structure summary

Code : 1KO0   PDBj   RCSB PDB   PDBe
Header : LYASE
Title : Crystal Structure of a D,L-lysine complex of diaminopimelate decarboxylase
Release Data : 2003-11-11
Compound :
mol_id molecule chains synonym
1 Diaminopimelate decarboxylase A DAP DECARBOXYLASE
ec: 4.1.1.20
Source :
mol_id organism_scientific expression_system
1 Escherichia coli  (taxid:562) Escherichia coli BL21(DE3)  (taxid:469008)
gene: lysA
expression_system_strain: BL21(DE3)
expression_system_vector_type: plasmid
expression_system_plasmid: pCM1
Authors : Levdikov, V., Blagova, L., Bose, N., Momany, C.
Keywords : pyridoxal-5'-phosphate, diaminopimelate, lysine, PLP, TIM-barrel, LYASE
Exp. method : X-RAY DIFFRACTION ( 2.20 Å )
Citation :

Diaminopimelate Decarboxylase uses a Versatile Active Site for Stereospecific Decarboxylation

Levdikov, V.,Blagova, L.,Bose, N.  et al.
To be Published 

Reaction

Chain : A
UniProt : P00861 (DCDA_ECOLI)
Reaction: EC: Evidence:
Physiological Direction:
meso-2,6-diaminopimelate + H(+) = L-lysine + CO2 4.1.1.20 PubMed:11856852, PubMed:14343156, PubMed:18508763
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Cofactor: Evidence: Note:
pyridoxal 5'-phosphate ECO:0000269 | PubMed:11856852
ECO:0000269 | PubMed:14343156
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