Brand  (β version)

PDB ID: 1JGO

Hetero Atom Contents

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Ligands
Code Name Style Show Link
Non-standard Residues
Code Name Show
1MA 6-hydro-1-methyladenosine-5'-monophosphate
2MG 2n-methylguanosine-5'-monophosphate
4SU 4-thiouridine-5'-monophosphate
5MC 5-methylcytidine-5'-monophosphate
5MU 5-methyluridine 5'-monophosphate
7MG 7n-methyl-8-hydroguanosine-5'-monophosphate
H2U 5,6-dihydrouridine-5'-monophosphate
M2G N2-dimethylguanosine-5'-monophosphate
OMC O2'-methylycytidine-5'-monophosphate
OMG O2'-methylguanosine-5'-monophosphate
PSU Pseudouridine-5'-monophosphate
YG Wybutosine
Glycosylation
Code Name Emphasize
Modification
Code Name Show

Structure summary

Code : 1JGO   PDBj   RCSB PDB   PDBe
Header : RIBOSOME
Title : The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
Release Data : 2001-07-20
Compound :
mol_id molecule chains
1 30S 16S ribosomal RNA A
mol_id molecule chains
2 tRNA(Phe) B,C
other_details: A-site tRNA chain B, P-site tRNA chain C
mol_id molecule chains
3 tRNA(Phe) D
other_details: E-site tRNA
mol_id molecule chains
4 MESSENGER RNA MK27 1
other_details: 27 nt long mRNA fragment. The actual sequence GGCAAGGAGGUAAAA AUGAAA AAAAAA modeled as GGCAAGGAGGUAAAA UUUUUU AAAAAA
mol_id molecule chains
5 30S RIBOSOMAL PROTEIN S2 E
mol_id molecule chains
6 30S RIBOSOMAL PROTEIN S3 F
mol_id molecule chains
7 30S RIBOSOMAL PROTEIN S4 G
mol_id molecule chains
8 30S RIBOSOMAL PROTEIN S5 H
mol_id molecule chains
9 30S RIBOSOMAL PROTEIN S6 I
mol_id molecule chains
10 30S RIBOSOMAL PROTEIN S7 J
mol_id molecule chains
11 30S RIBOSOMAL PROTEIN S8 K
mol_id molecule chains
12 30S RIBOSOMAL PROTEIN S9 L
mol_id molecule chains
13 30S RIBOSOMAL PROTEIN S10 M
mol_id molecule chains
14 30S RIBOSOMAL PROTEIN S11 N
mol_id molecule chains
15 30S RIBOSOMAL PROTEIN S12 O
mol_id molecule chains
16 30S RIBOSOMAL PROTEIN S13 P
mol_id molecule chains
17 30S RIBOSOMAL PROTEIN S14 Q
mol_id molecule chains
18 30S RIBOSOMAL PROTEIN S15 R
mol_id molecule chains
19 30S RIBOSOMAL PROTEIN S16 S
mol_id molecule chains
20 30S RIBOSOMAL PROTEIN S17 T
mol_id molecule chains
21 30S RIBOSOMAL PROTEIN S18 U
mol_id molecule chains
22 30S RIBOSOMAL PROTEIN S19 V
mol_id molecule chains
23 30S RIBOSOMAL PROTEIN S20 W
mol_id molecule chains
24 30S RIBOSOMAL PROTEIN THX X
Source :
mol_id organism_scientific
1 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
2
synthetic: yes
other_details: sequence naturally occurs in Saccharomyces cerevisiae
mol_id organism_scientific
3
synthetic: yes
other_details: sequence naturally occurs in Saccharomyces cerevisiae
mol_id organism_scientific
4
synthetic: yes
mol_id organism_scientific
5 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
6 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
7 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
8 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
9 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
10 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
11 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
12 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
13 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
14 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
15 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
16 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
17 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
18 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
19 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
20 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
21 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
22 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
23 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
24 Thermus thermophilus  (taxid:274)
Authors : Yusupova, G.Z., Yusupov, M.M., Cate, J.H.D., Noller, H.F.
Keywords : ribosome assembly, protein synthesis, life, RIBOSOME
Exp. method : X-RAY DIFFRACTION ( 5.6 Å )
Citation :

The path of messenger RNA through the ribosome.

Yusupova, G.Z.,Yusupov, M.M.,Cate, J.H.  et al.
(2001)  Cell(Cambridge,Mass.)  106 : 233 - 241

PubMed: 11511350
DOI: 10.1016/S0092-8674(01)00435-4

Reaction

Chain : E
UniProt : P80371 (RS2_THET8)
Reaction : -
Chain : G
UniProt : P80373 (RS4_THET8)
Reaction : -
Chain : H
UniProt : Q5SHQ5 (RS5_THET8)
Reaction : -
Chain : I
UniProt : Q5SLP8 (RS6_THET8)
Reaction : -
Chain : J
UniProt : P17291 (RS7_THET8)
Reaction : -
Chain : K
UniProt : Q5SHQ2 (RS8_THET8)
Reaction : -
Chain : L
UniProt : P80374 (RS9_THET8)
Reaction : -
Chain : M
UniProt : Q5SHN7 (RS10_THET8)
Reaction : -
Chain : N
UniProt : P80376 (RS11_THET8)
Reaction : -
Chain : O
UniProt : Q5SHN3 (RS12_THET8)
Reaction : -
Chain : P
UniProt : P80377 (RS13_THET8)
Reaction : -
Chain : Q
UniProt : Q5SHQ1 (RS14Z_THET8)
Reaction : -
Chain : R
UniProt : Q5SJ76 (RS15_THET8)
Reaction : -
Chain : V
UniProt : P80381 (RS19_THETH)
Reaction : -
Chain : X
UniProt : P32193 (multiple entry names are found)
Reaction : -