Het-PDB Navi2 (PDB: 1I7J)

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Ligands
Code	Name		Style	Show	Link
MG	Magnesium ion				PoSSuM
MPD	(4s)-2-methyl-2,4-pentanediol				PoSSuM

Non-standard Residues
Code	Name	Show
OMC	O2'-methylycytidine-5'-monophosphate
OMG	O2'-methylguanosine-5'-monophosphate

Glycosylation
Code	Name	Emphasize

Modification
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Download interaction data: 1I7J

Code :

1I7J PDBj RCSB PDB PDBe

Header :

RNA

Title :

CRYSTAL STRUCTURE OF 2'-O-ME(CGCGCG)2: AN RNA DUPLEX AT 1.19 A RESOLUTION. 2-METHYL-2,4-PENTANEDIOL AND MAGNESIUM BINDING.

Release Data :

2001-09-21

Compound :

mol_id	molecule	chains
1	5'-R((OMC)P(OMG)P(OMC)P(OMG)P(OMC)P(OMG))-3'	A,B

Source :

mol_id	organism_scientific
1
	synthetic: yes

Authors :

Adamiak, D.A., Rypniewski, W.R., Milecki, J., Adamiak, R.W.

Keywords :

2'-O-MeRNA duplex, 2-methyl-2, 4-pentanediol, magnesium, groove hydration and binding, RNA

Exp. method :

X-RAY DIFFRACTION ( 1.19 Å )

Citation :

The 1.19 A X-ray structure of 2'-O-Me(CGCGCG)(2) duplex shows dehydrated RNA with 2-methyl-2,4-pentanediol in the minor groove.

Adamiak, D.A.,Rypniewski, W.R.,Milecki, J. et al.
(2001) Nucleic Acids Res. 29 : 4144 - 4153

CRYSTAL STRUCTURE OF 2'-O-ME(CGCGCG)2: AN RNA DUPLEX AT 1.3 A RESOLUTION. HYDRATION PATTERN OF 2'-O-METHYLATED RNA

Adamiak, D.A.,Milecki, J.,Popenda, W. et al.
(1997) Nucleic Acids Res. 25 : 4599 - 4607

PDB ID: 1I7J