Het-PDB Navi2 (PDB: 1HM1)

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Ligands
Code	Name		Style	Show	Link

Non-standard Residues
Code	Name	Show
FAG	[1',2'-dideoxy[2-amino-5-([9-hydroxy-aflatoxinb2-8-yl]-formyl-amino)-6-oxo-1,6-ihydro-pyrimidin-4-ylamino]-ribofuranose]-5-monophosphate group

Glycosylation
Code	Name	Emphasize

Modification
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Download interaction data: 1HM1

Code :

1HM1 PDBj RCSB PDB PDBe

Header :

DNA

Title :

THE SOLUTION NMR STRUCTURE OF A THERMALLY STABLE FAPY ADDUCT OF AFLATOXIN B1 IN AN OLIGODEOXYNUCLEOTIDE DUPLEX REFINED FROM DISTANCE RESTRAINED MOLECULAR DYNAMICS SIMULATED ANNEALING, MINIMIZED AVERAGE STRUCTURE

Release Data :

1998-10-14

Compound :

mol_id	molecule	chains
1	DNA (5'-D(CPTPAPTP(FAG)PAPTPTPCPA)-3')	A
	other_details: CHAIN A, GUA 5 -> FAG, FAPY ADDUCT OF

mol_id	molecule	chains
2	DNA (5'-D(TPGPAPAPTPCPAPTPAP*G)-3')	B

Source :

mol_id	organism_scientific
1
	synthetic: yes

mol_id	organism_scientific
2
	synthetic: yes

Authors :

Mao, H., Deng, Z., Wang, F., Harris, T.M., Stone, M.P.

Keywords :

AFLATOXIN B1, FAPY, FORMAMIDOPYRIMIDINE, INTERCALATION, DNA DUPLEX, SOLUTION STRUCTURE, DNA ADDUCT, DEOXYRIBONUCLEIC ACID, DNA

Exp. method :

SOLUTION NMR

Citation :

An intercalated and thermally stable FAPY adduct of aflatoxin B1 in a DNA duplex: structural refinement from 1H NMR.

Mao, H.,Deng, Z.,Wang, F. et al.
(1998) Biochemistry 37 : 4374 - 4387

PubMed: 9521757
DOI: 10.1021/bi9718292

PDB ID: 1HM1

Hetero Atom Contents

Structure summary