Brand  (β version)

PDB ID: 1FZM

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Ligands
Code Name Style Show Link
MPD (4s)-2-methyl-2,4-pentanediol PoSSuM
MRD (4r)-2-methylpentane-2,4-diol PoSSuM
PO4 Phosphate ion PoSSuM
Non-standard Residues
Code Name Show
CSO S-hydroxycysteine
Glycosylation
Code Name Emphasize
FUL Beta-L-fucopyranose
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose
Modification
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Structure summary

Code : 1FZM   PDBj   RCSB PDB   PDBe
Header : IMMUNE SYSTEM
Title : MHC CLASS I NATURAL MUTANT H-2KBM8 HEAVY CHAIN COMPLEXED WITH BETA-2 MICROGLOBULIN AND VESICULAR STOMATITIS VIRUS NUCLEOPROTEIN
Release Data : 2001-03-28
Compound :
mol_id molecule chains
1 H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, K-B ALPHA CHAIN A
fragment: EXTRACELLULAR DOMAIN
mutation: Y22F, M23I, E24S, D30N
mol_id molecule chains
2 PROTEIN (BETA-2-MICROGLOBULIN) B
mol_id molecule chains synonym
3 PROTEIN (NUCLEOCAPSID PROTEIN) P VSV8
fragment: RESIDUES 52-59
Source :
mol_id organism_scientific organism_common expression_system
1 Mus musculus  (taxid:10090) House mouse Drosophila melanogaster  (taxid:7227)
expression_system_common: Fruit fly
mol_id organism_scientific organism_common expression_system
2 Mus musculus  (taxid:10090) House mouse Drosophila melanogaster  (taxid:7227)
expression_system_common: Fruit fly
mol_id organism_scientific
3
synthetic: yes
other_details: The peptide was chemically synthesized. The sequence of the peptide is found naturally in Vesicular stomatitis virus.
Authors : Rudolph, M.G., Speir, J.A., Brunmark, A., Mattsson, N., Jackson, M.R., Peterson, P.A., Teyton, L., Wilson, I.A.
Keywords : major histocompatibility complex peptide-MHC, IMMUNE SYSTEM
Exp. method : X-RAY DIFFRACTION ( 1.80 Å )
Citation :

The crystal structures of K(bm1) and K(bm8) reveal that subtle changes in the peptide environment impact thermostability and alloreactivity.

Rudolph, M.G.,Speir, J.A.,Brunmark, A.  et al.
(2001)  Immunity  14 : 231 - 242

PubMed: 11290333
DOI: 10.1016/S1074-7613(01)00105-4

Reaction

Chain : A
UniProt : P01901 (HA1B_MOUSE)
Reaction : -
Chain : B
UniProt : P01887 (B2MG_MOUSE)
Reaction : -
Chain : P
UniProt : P11212 (NCAP_VSIVG)
Reaction : -