Brand  (β version)

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Modified Residues
Code Name Link
N Any 5'-monophosphate nucleotide
4SU 4-thiouridine-5'-monophosphate
5MU 5-methyluridine 5'-monophosphate
H2U 5,6-dihydrouridine-5'-monophosphate
OMC O2'-methylycytidine-5'-monophosphate
PSU Pseudouridine-5'-monophosphate
Code : 1EG0
Header : RIBOSOME
Title : FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOME
Release Data : 2000-03-06
Compound :
mol_id molecule chains
1 FRAGMENT OF 16S RRNA HELIX 23 I
fragment: RESIDUES 673-713
other_details: MODELED AS ANALOGOUS FRAGMENT OF T. THERMOPHILUS TAKEN FROM PDB ENTRY 1QD7
mol_id molecule chains
2 FRAGMENT OF 23S RRNA L
fragment: RESIDUES 1051-1108
other_details: T. MARITIMA RNA SEQUENCE AND MODEL TAKEN FROM PDB ENTRY 1MMS
mol_id molecule chains
3 HELIX 95 OF 23S RRNA M
other_details: E.COLI RNA SEQUENCE AND MODEL TAKEN FROM PDB ENTRY 480D
mol_id molecule chains synonym
4 FORMYL-METHIONYL-TRNA O FMET-TRNA
other_details: E.COLI FMET-TRNA SEQUENCE AND MODEL TAKEN FROM PDB ENTRY 2FMT
mol_id molecule chains
5 PROTEIN (S4 RIBOSOMAL PROTEIN) A
other_details: MODELED BY ANALOGOUS PROTEIN OF B. STEAROTHERMOPHILUS TAKEN FROM PDB ENTRY 1C06
mol_id molecule chains
6 PROTEIN (S5 RIBOSOMAL PROTEIN) B
other_details: MODELED BY ANALOGOUS PROTEIN OF B. STEAROTHERMOPHILUS TAKEN FROM PDB ENTRY 1PKP
mol_id molecule chains
7 PROTEIN (S6 RIBOSOMAL PROTEIN) C
other_details: MODELED BY ANALOGOUS PROTEIN OF T.THERMOPHILUS TAKEN FROM PDB ENTRY 1RIS
mol_id molecule chains
8 PROTEIN (S7 RIBOSOMAL PROTEIN) D
other_details: MODELED BY ANALOGOUS PROTEIN OF T. THERMOPHILUS TAKEN FROM PDB ENTRY 1RSS
mol_id molecule chains
9 PROTEIN (S8 RIBOSOMAL PROTEIN) E
other_details: MODELED BY ANALOGOUS PROTEIN OF T. THERMOPHILUS TAKEN FROM PDB ENTRY 1AN7
mol_id molecule chains
10 PROTEIN (S15 RIBOSOMAL PROTEIN) F
other_details: MODELED BY ANALOGOUS PROTEIN OF B. STEAROTHERMOPHILUS TAKEN FROM PDB ENTRY 1A32
mol_id molecule chains
11 PROTEIN (S17 RIBOSOMAL PROTEIN) G
other_details: MODELED BY ANALOGOUS PROTEIN OF B. STEAROTHERMOPHILUS TAKEN FROM PDB ENTRIES 1RIP AND 1QD7
mol_id molecule chains
12 PROTEIN (S20 RIBOSOMAL PROTEIN) H
other_details: MODELED BY ANALOGOUS PROTEIN OF T. THERMOPHILUS TAKEN FROM PDB ENTRY 1QD7
mol_id molecule chains
13 PROTEIN (RIBOSOMAL PROTEIN L1) N
other_details: MODELED BY ANALOGOUS PROTEIN OF T. THERMOPHILUS TAKEN FROM PDB ENTRY 1AD2
mol_id molecule chains
14 PROTEIN (RIBOSOMAL PROTEIN L6) J
mutation: B. STEAROTHERMOPHILUS SEQUENCE AND MODEL
other_details: MODELED BY ANALOGOUS PROTEIN OF T. STEAROTHERMOPHILUS TAKEN FROM PDB ENTRY 1RL6
mol_id molecule chains
15 PROTEIN (RIBOSOMAL PROTEIN L11) K
other_details: MODELED BY ANALOGOUS PROTEIN OF T. MARITIMA TAKEN FROM PDB ENTRY 1MMS
Source :
mol_id organism_scientific
1 Escherichia coli  (taxid:562)
mol_id organism_scientific
2 Escherichia coli  (taxid:562)
mol_id organism_scientific
3 Escherichia coli  (taxid:562)
mol_id organism_scientific
4 Escherichia coli  (taxid:562)
mol_id organism_scientific
5 Escherichia coli  (taxid:562)
mol_id organism_scientific
6 Escherichia coli  (taxid:562)
mol_id organism_scientific
7 Escherichia coli  (taxid:562)
mol_id organism_scientific
8 Escherichia coli  (taxid:562)
mol_id organism_scientific
9 Escherichia coli  (taxid:562)
mol_id organism_scientific
10 Escherichia coli  (taxid:562)
mol_id organism_scientific
11 Escherichia coli  (taxid:562)
mol_id organism_scientific
12 Escherichia coli  (taxid:562)
mol_id organism_scientific
13 Escherichia coli  (taxid:562)
mol_id organism_scientific
14 Escherichia coli  (taxid:562)
mol_id organism_scientific
15 Escherichia coli  (taxid:562)
Authors : Gabashvili, I.S., Agrawal, R.K., Spahn, C.M.T., Grassucci, R.A., Svergun, D.I., Frank, J., Penczek, P.
Keywords : 70S RIBOSOME, LOW RESOLUTION MODEL, RIBOSOME
Exp. method : ELECTRON MICROSCOPY ( 11.5 Å )
Citation :

Solution structure of the E. coli 70S ribosome at 11.5 A resolution.

Gabashvili, I.S.,Agrawal, R.K.,Spahn, C.M.  et al.
(2000)  Cell(Cambridge,Mass.)  100 : 537 - 549

PubMed: 10721991
DOI: 10.1016/S0092-8674(00)80690-X

The Crystal Structure of Ribosomal Protein S4 Reveals a Two-Domain Molecule with an Extensive RNA-Binding Surface: One Domain Shows Structural Homology to the Ets DNA-Binding Motif

Davies, C.,Gerstner, R.B.,Draper, D.E.  et al.
(1998)  Embo J.  17 : 4545

DOI: 10.1093/emboj/17.16.4545

The Structure of Ribosomal Protein S5 Reveals Sites of Interaction with 16S Rrna

Ramakrishnan, V.,White, S.W.
(1992)  Nature  358 : 768

DOI: 10.1038/358768a0

Crystal Structure of the Ribosomal Protein S6 from Thermus Thermophilus

Lindahl, M.,Svensson, L.A.,Liljas, A.  et al.
(1994)  Embo J.  13 : 1249

The Structure of Ribosomal Protein S7 at 1.9 A Resolution Reveals a Beta- Hairpin Motif that Binds Double-Stranded Nucleic Acids

Wimberly, B.T.,White, S.W.,Ramakrishnan, V.
(1997)  Structure  5 : 1187

DOI: 10.1016/S0969-2126(97)00269-4

Crystal Structure of Ribosomal Protein S8 from Thermus Thermophilus Reveals a High Degree of Structural Conservation of a Specific RNA Binding Site

Nevskaya, N.,Tischenko, S.,Nikulin, A.  et al.
(1998)  J.Mol.Biol.  279 : 233

DOI: 10.1006/jmbi.1998.1758

Conformational Variability of the N-Terminal Helix in the Structure of Ribosomal Protein S15

Clemons Jr., W.M.,Davies, C.R.,White, S.W.  et al.
(1998)  Structure  6 : 429

Solution Structure of Prokaryotic Ribosomal Protein S17 by High-Resolution NMR Spectroscopy

Jaishree, T.,Ramakrishnan, V.,White, S.W.
(1996)  Biochemistry  35 : 2845

DOI: 10.1021/bi951062i

Structure of a bacterial 30S ribosomal subunit at 5.5 A resolution

Clemons Jr., W.M.,May, J.L.C.,Wimberly, B.T.  et al.
(1999)  Nature  400 : 833 - 840

Ribosomal Protein L6: Structural Evidence of Gene Duplication from a Primitive RNA-Binding Protein

Golden, B.L.,Davies, C.,Ramakrishnan, V.  et al.
(1993)  Embo J.  12 : 4901

A Detailed View of a Ribosomal Active Site: The Structure of the L11-RNA Complex

Wimberly, B.T.,Guymon, R.,Mccutcheon, J.P.  et al.
(1999)  Cell(Cambridge,Mass.)  97 : 491

DOI: 10.1016/S0092-8674(00)80759-X

The Two Faces of the Escherichia Coli 23 S Rrna Sarcin/Ricin Domain: The Structure at 1.11 A Resolution

Correll, C.C.,Wool, I.G.,Munishkin, A.
(1999)  J.Mol.Biol.  292 : 275

DOI: 10.1006/jmbi.1999.3072

Crystal Structure of the RNA Binding Ribosomal Prot L1 from Thermus Thermophilus

Nikonov, S.,Nevskaya, N.,Eliseikina, I.  et al.
(1996)  Embo J.  15 : 1350

Crystal Structure of Methionyl-Trnafmet Transformylase Complexed with the Initiator Formyl-Methionyl-Trnafmet

Schmitt, E.,Panvert, M.,Blanquet, S.  et al.
(1998)  Embo J.  17 : 6819

DOI: 10.1093/emboj/17.23.6819

Chain : A
UniProt : P81288 (RS4_GEOSE)
Reaction : -
Chain : B
UniProt : P02357 (RS5_GEOSE)
Reaction : -
Chain : C
UniProt : P23370 (RS6_THETH)
Reaction : -
Chain : D
UniProt : P17291 (RS7_THET8)
Reaction : -
Chain : F
UniProt : P80378 (RS15_THETH)
Reaction : -
Chain : G
UniProt : P23828 (RS17_GEOSE)
Reaction : -
Chain : N
UniProt : P27150 (RL1_THETH)
Reaction : -
Chain : J
UniProt : P02391 (RL6_GEOSE)
Reaction : -
Chain : K
UniProt : P29395 (RL11_THEMA)
Reaction : -